Pybind11和std :: vector —如何使用胶囊释放数据？

Question

I have a C++ function that returns a std::vector and, using Pybind11, I would like to return the contents of that vector as a Numpy array without having to copy the underlying data of the vector into a raw data array.

Current Attempt

In this well-written SO answer the author demonstrates how to ensure that a raw data array created in C++ is appropriately freed when the Numpy array has zero reference count. I tried to write a version of this using std::vector instead:

// aside - I made a templated version of the wrapper with which
// I create specific instances of in the PYBIND11_MODULE definitions:
//
//     m.def("my_func", &wrapper<int>, ...)
//     m.def("my_func", &wrapper<float>, ...)
// 
template <typename T>
py::array_t<T> wrapper(py::array_t<T> input) {
    auto proxy = input.template unchecked<1>();
    std::vector<T> result = compute_something_returns_vector(proxy);

    // give memory cleanup responsibility to the Numpy array
    py::capsule free_when_done(result.data(), [](void *f) {
        auto foo = reinterpret_cast<T  *>(f);
        delete[] foo;
    });

    return py::array_t<T>({result.size()}, // shape
                          {sizeof(T)},     // stride
                          result.data(),   // data pointer
                          free_when_done);
}

Observed Issues

However, if I call this from Python I observe two things: (1) the data in the output array is garbage and (2) when I manually delete the Numpy array I receive the following error (SIGABRT):

python3(91198,0x7fff9f2c73c0) malloc: *** error for object 0x7f8816561550: pointer being freed was not allocated

My guess is that this issue has to do with the line " delete[] foo ", which presumably is being called with foo set to result.data() . This is not the way to deallocate a std::vector .

Possible Solutions

One possible solution is to create a T *ptr = new T[result.size()] and copy the contents of result to this raw data array. However, I have cases where the results might be large and I want to avoid taking all of that time to allocate and copy. (But perhaps it's not as long as I think it would be.)

Also, I don't know much about std::allocator but perhaps there is a way to allocate the raw data array needed by the output vector outside the compute_something_returns_vector() function call and then discard the std::vector afterwards, retaining the underlying raw data array?

The final option is to rewrite compute_something_returns_vector .

Answer 1

After an offline discussion with a colleague I resolved my problem. I do not want to commit an SO faux pas so I won't accept my own answer. However, for the sake of using SO as a catalog of information I want to provide the answer here for others.

The problem was simple: result was stack-allocated and needed to be heap-allocated so that free_when_done can take ownership. Below is an example fix:

{
    // ... snip ...

    std::vector<T> *result = new std::vector<T>(compute_something_returns_vector(proxy));

    py::capsule free_when_done(result, [](void *f) {
      auto foo = reinterpret_cast<std::vector<T> *>(f);
      delete foo;
    });

    return py::array_t<T>({result->size()}, // shape
                          {sizeof(T)},      // stride
                          result->data(),   // data pointer
                          free_when_done);
}

I was also able to implement a solution using std::unique_ptr that doesn't require the use of a free_when_done function. However, I wasn't able to run Valgrind with either solution so I'm not 100% sure that the memory held by the vector was appropriately freed. (Valgrind + Python is a mystery to me.) For completeness, below is the std::unique_ptr approach:

{
    // ... snip ...

    std::unique_ptr<std::vector<T>> result =
        std::make_unique<std::vector<T>>(compute_something_returns_vector(proxy));

    return py::array_t<T>({result->size()}, // shape
                          {sizeof(T)},      // stride
                          result->data());  // data pointer
}

I was, however, able to inspect the addresses of the vectors allocated in both the Python and C++ code and confirmed that no copies of the output of compute_something_returns_vector() were made.