Can't install packages in R
Question
[Asking for a colleague because his post is considered as a spam by the website bot.]
I am trying to install the package stringr on R.
I ran install.packages("stringr") in RStudio and it raised an error. Then, I try installing it from the terminal and it raised a similar error, see below. Any package I try to install raises the same issue.
I have Windows 10 but I do not have admin rights. I have R version 4.0.5. I installed R and RStudio via Anaconda. By the way, it seems that there is an issue with Rtools. The content of.Renviron is PATH="${RTOOLS42_HOME}\usr\bin;${PATH}" (as it should be I guess) but Sys.which("make") returns "" in Rstudio. One last thing, my R home environment is on my OneDrive folder, maybe this causes the issue?
Any idea?
C:\Users\TDOUENN>Rscript -e "install.packages('stringr', repos='https://cran.rstudio.com/')"
Installing package into 'C:/Users/TDOUENN/OneDrive - UvA/Documents/My_RLibs'
(as 'lib' is unspecified)
also installing the dependencies 'cli', 'rlang', 'lifecycle'
There are binary versions available but the source versions are later:
binary source needs_compilation
cli 3.2.0 3.6.0 TRUE
rlang 1.0.2 1.0.6 TRUE
lifecycle 1.0.1 1.0.3 FALSE
stringr 1.4.0 1.5.0 FALSE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/cli_3.2.0.zip'
Content type 'application/zip' length 1255499 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/rlang_1.0.2.zip'
Content type 'application/zip' length 1718546 bytes (1.6 MB)
==================================================
downloaded 1.6 MB
package 'cli' successfully unpacked and MD5 sums checked
package 'rlang' successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\TDOUENN\AppData\Local\Temp\RtmpkPFcWJ\downloaded_packages
installing the source packages 'lifecycle', 'stringr'
trying URL 'https://cran.rstudio.com/src/contrib/lifecycle_1.0.3.tar.gz'
Content type 'application/x-gzip' length 106854 bytes (104 KB)
==================================================
downloaded 104 KB
trying URL 'https://cran.rstudio.com/src/contrib/stringr_1.5.0.tar.gz'
Content type 'application/x-gzip' length 175699 bytes (171 KB)
==================================================
downloaded 171 KB
* installing *source* package 'lifecycle' ...
** package 'lifecycle' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 1.0.2 is being loaded, but >= 1.0.6 is required
Calls: <Anonymous> ... withCallingHandlers -> loadNamespace -> namespaceImport -> loadNamespace
Execution halted
ERROR: lazy loading failed for package 'lifecycle'
* removing 'C:/Users/TDOUENN/OneDrive - UvA/Documents/My_RLibs/lifecycle'
* installing *source* package 'stringr' ...
** package 'stringr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace 'lifecycle' 1.0.0 is being loaded, but >= 1.0.3 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package 'stringr'
* removing 'C:/Users/TDOUENN/OneDrive - UvA/Documents/My_RLibs/stringr'
The downloaded source packages are in
'C:\Users\TDOUENN\AppData\Local\Temp\RtmpkPFcWJ\downloaded_packages'
Warning messages:
1: In install.packages("stringr", repos = "https://cran.rstudio.com/") :
installation of package 'lifecycle' had non-zero exit status
2: In install.packages("stringr", repos = "https://cran.rstudio.com/") :
installation of package 'stringr' had non-zero exit status
C:\Users\TDOUENN>Rscript -e "install.packages('stringr', repos='https://cran.rstudio.com/')"
1 answers
solution1
0 2023-01-26 19:59:36
Based on these lines from the error message:
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace 'rlang' 1.0.2 is being loaded, but >= 1.0.6 is required
And this error:
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace 'lifecycle' 1.0.0 is being loaded, but >= 1.0.3 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
It looks like your colleague needs to update their lifecycle and rlang packages in order to install stringr.
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