I am a beginner with imageJ. I wanted to start using scripting tools, I started with writing a simple function as shown below, to mark a single pixel ...

I am trying to analyze confocal microscopy image for cFos analysis. From maxstacked image, I took ROI of DAPI and enlarged the ROI to detect the degre ...

I have around 30 images and use ImageJ macros to analyse the particles (area, circularity, etc.) in the batch. From the macros script that I'm using, ...

I want to build a plugin with fiji, where I input an avi video/frame sequences of grayscale and output the avi/frames with no black frames (remove the ...

I am working on a macro for ImageJ. The goal is to take colour scans with several seeds on them and crop around the seeds to get several equally sized ...

I'm currently trying to batch process a lot of lab images at once using ImageJ/Fiji but I'm having a hard time making it process the images. Whenever ...

I have a macro in Fiji where I am using the waitForUser("For creating the plot", "Make a line along the diameter of the cell and press OK") code and I ...

I am trying to put n dots randomly on a selected ROI in an image using the macro; But now, I want a condition that I should not get (x,y) in a (x-1 ...

I am working with a large number of image files within several subdirectories of one parent folder. I am attempting to run an ImageJ macro to batch-p ...

I wrote the code as follows in ImageJ. But the image window is not created in open. I want to load all the tif files into the folder and see them. ...

I was wondering if it is possible to write in into macro to repeat just a part of the macro in imageJ. I have a code and instead of copying and pa ...

I try to analyze images with Fiji. Therefore I first “calibrate” the scale with set scale run(“Set Scale…”, “distance=52.6 known=30 pixel=1 unit=no gl ...

I'm new to ImageJ and ImageJ macro. I started to make a macro that apply the "Find Maxima" function on an image. Then I would like to test each pixel ...

I am new to ImageJ macros and I want to use a macro in Fiji. The code for the macro is from this source. I have downloaded the code and saved it as ...

New to FIJI and ImageJ here, so I apologize if this question sounds idiotic to the veterans. I came across a really cool toolset that can deblur laser ...

After some image processing using ImgaeJ macro, I have a ‘Results’ tab which contains 2 columns A and B. Lets’s say I have 50 rows of data. Now I wan ...

I am trying to write a Macro in IJ1 which would ask the user: the number of event they want to record to name those events I started using Sc ...

I have two separate folders with equal number of images from microscopy (134 images in each folder). These are two different dyes for a specific cells ...

I'm trying to write a code in Image J that will: Open all images in separate windows that end in " - GFP.vsi" within a folder Use look up tables ...

I am trying to create a macro that will run a loop through a file containing images. To open the images I am using Bio-Format importer, and the code i ...