
[英]scatter plot, colored by category variable, faceted over categorical variable in r
[英]Show reference category OR of a categorical variable in a plot using Plot_models of the sjTools package
Using the function plot_models
from the R package sjTools
I plotted the estimates (ORs) from a logistic regression model predicting the odds for university admission based on GRE score (continuous), GPA score (continuous), and rank of high school (categorical). 但是,plot 没有显示我的分类变量的参考类别(即高中排名;参考类别估计显然是 OR=1.00)。
有没有办法让plot_models
做到这一点?
# Load packages and data
library(tidyverse)
library(sjPlot)
mydata <- read.csv("https://stats.idre.ucla.edu/stat/data/binary.csv")
str(mydata)
# Convert high school rank variable to factor.
mydata$rank <- factor(mydata$rank)
# Fit model.
mylogit1 <- glm(admit ~ gre + gpa + rank, data = mydata, family = "binomial")
# Produce forest plot
plot1 <- plot_models(mylogit1, title="Odds for admission to university
for high school students",
show.legend=FALSE)
plot1
这会产生一个 plot不显示排名的参考类别(即 rank .
我试过的:
show.reflvl=TRUE
这是 sjPlot 表的参数,但这不起作用。rank
创建一个虚拟变量并运行包括所有四个变量的回归,但这会产生警告: Model matrix is rank deficient. Parameters rank_1 were not estimable.
Model matrix is rank deficient. Parameters rank_1 were not estimable.
# Plot using dummy variables
library(fastDummies)
mydata <- dummy_cols(mydata, select_columns='rank')
# Fit model.
mylogit2 <- glm(admit ~ gre + gpa + rank_4 + rank_3 + rank_2 + rank_1, data=mydata, family="binomial")
# Produce forest plot
plot2 <- plot_models(mylogit2, title="Odds for admission to university
for high school students",
show.legend=FALSE)
plot2
有什么想法吗? 谢谢!
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