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如何使用 docker 安装 bob python 工具包？

[英]How to install bob python toolkit with docker?

 原文  2021-10-21 16:46:29  5   1    python/ docker/ python-bob

问题描述

我正在尝试安装bob.learn.em ，但没有任何记录在案的直接方法来安装 bob。

有一些非常古老的资源可以用来安装 bob：

https://hub.docker.com/r/artimi/bob

https://github.com/Artimi/bob_docker_image/blob/master/Dockerfile

但是他们都不能安装bob.learn.em或任何最新的 bob 包。

我在尝试 pip 和 conda 时都不成功，官方文档（ https://www.idiap.ch/software/bob/docs/bob/docs/stable/install.html ）不起作用（至少对于我的系统而言） ，我什至在 docker 容器中尝试过 conda）

是否有任何 docker 容器或可复制的方法来安装 bob 和 bob 包，如bob.learn.em ？

anaconda3 容器内的错误，

 docker pull continuumio/anaconda3
Using default tag: latest
latest: Pulling from continuumio/anaconda3
7d63c13d9b9b: Pull complete
49c20f8a042a: Pull complete
Digest: sha256:d7b270f0460d03956a8bcc4d8bffe2426eec5d260fd5256e0a197d0e2e2f7941
Status: Downloaded newer image for continuumio/anaconda3:latest
tigerit@tigerit-SYS-1029GQ-TVRT:~$ docker run -i -t continuumio/anaconda3 /bin/bash
(base) root@b29e88642f09:/# ls
bin   dev  home  lib64  mnt  proc  run   srv  tmp  var
boot  etc  lib   media  opt  root  sbin  sys  usr
(base) root@b29e88642f09:/# ls
bin   dev  home  lib64  mnt  proc  run   srv  tmp  var
boot  etc  lib   media  opt  root  sbin  sys  usr
(base) root@b29e88642f09:/# conda --version
conda 4.10.1
(base) root@b29e88642f09:/# conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /opt/conda

  added / updated specs:
    - conda


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    conda-4.10.3               |   py38h06a4308_0         2.9 MB
    xmltodict-0.12.0           |     pyhd3eb1b0_0          13 KB
    ------------------------------------------------------------
                                           Total:         2.9 MB

The following packages will be UPDATED:

  conda                               4.10.1-py38h06a4308_1 --> 4.10.3-py38h06a4308_0

The following packages will be DOWNGRADED:

  xmltodict                                     0.12.0-py_0 --> 0.12.0-pyhd3eb1b0_0


Proceed ([y]/n)? y


Downloading and Extracting Packages
xmltodict-0.12.0     | 13 KB     | ##################################### | 100%
conda-4.10.3         | 2.9 MB    | ##################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(base) root@b29e88642f09:/# conda config --set show_channel_urls True
(base) root@b29e88642f09:/# conda create --name bob_env1 --override-channels \
  -c https://www.idiap.ch/software/bob/conda -c defaults \
  python=3 bob.learn.em
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: \
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                       \

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package python conflicts for:
python=3
bob.learn.em -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|3.4.*']
bob.learn.em -> boost[version='>=1.73.0,<1.73.1.0a0'] -> python[version='>=3.10,<3.11.0a0|>=3.9,<3.10.0a0|>=3.5,<3.6.0a0']The following specifications were found to be incompatible with your system:

  - feature:/linux-64::__glibc==2.31=0
  - feature:|@/linux-64::__glibc==2.31=0
  - bob.learn.em -> bob.extension[version='>=6.0.0,<7.0a0'] -> __glibc[version='>=2.17|>=2.17,<3.0.a0']

Your installed version is: 2.31


(base) root@b29e88642f09:/# conda create -n bdt -c https://www.idiap.ch/software/bob/conda bob.devtools
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed

UnsatisfiableError:

(base) root@b29e88642f09:/# conda install \
-c https://www.idiap.ch/software/bob/conda \
-c defaults \
-c https://www.idiap.ch/software/bob/conda/label/archive \
bob=4.0.0 bob.io.base
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: |
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed

UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:

Specifications:

  - bob.io.base -> python[version='>=3.10,<3.11.0a0|>=3.9,<3.10.0a0|>=3.5,<3.6.0a0']
  - bob=4.0.0 -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0']

Your python: python=3.8

If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.

The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package certifi conflicts for:
bob=4.0.0 -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
bob.io.base -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']

Package _libgcc_mutex conflicts for:
python=3.8 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='*|0.1',build=main]
bob.io.base -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='*|0.1',build=main]The following specifications were found to be incompatible with your system:

  - feature:/linux-64::__glibc==2.31=0
  - feature:|@/linux-64::__glibc==2.31=0
  - bob.io.base -> bob.extension[version='>=6.0.0,<7.0a0'] -> __glibc[version='>=2.17|>=2.17,<3.0.a0']

Your installed version is: 2.31


(base) root@b29e88642f09:/# ls
bin   dev  home  lib64  mnt  proc  run   srv  tmp  var
boot  etc  lib   media  opt  root  sbin  sys  usr
(base) root@b29e88642f09:/# mkdir bob
(base) root@b29e88642f09:/# cd bob
(base) root@b29e88642f09:/bob# wget https://www.idiap.ch/software/bob/docs/bob/docs/stable/_downloads/fb6ec72cab2ebaf2fbd8a4717d139e29/v300py36.yaml
--2021-10-21 16:35:26--  https://www.idiap.ch/software/bob/docs/bob/docs/stable/_downloads/fb6ec72cab2ebaf2fbd8a4717d139e29/v300py36.yaml
Resolving www.idiap.ch (www.idiap.ch)... 192.33.221.201
Connecting to www.idiap.ch (www.idiap.ch)|192.33.221.201|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 7020 (6.9K) [application/octet-stream]
Saving to: ‘v300py36.yaml’

v300py36.yaml       100%[===================>]   6.86K  --.-KB/s    in 0s

2021-10-21 16:35:28 (18.7 MB/s) - ‘v300py36.yaml’ saved [7020/7020]

(base) root@b29e88642f09:/bob# ls
v300py36.yaml
(base) root@b29e88642f09:/bob# conda env create --file v300py36.yaml
Collecting package metadata (repodata.json): done
Solving environment: failed

ResolvePackageNotFound:
  - ncurses==5.9=10
  - yaml==0.1.6=0
  - cython==0.25.2=py36_0
  - pyyaml==3.12=py36_0
  - icu==54.1=0
  - sqlite==3.13.0=0
  - pkg-config==0.28=1
  - numpy==1.12.1=py36_0
  - alabaster==0.7.10=py36_0
  - decorator==4.1.2=py36_0
  - html5lib==0.9999999=py36_0
  - mpc==1.0.3=0
  - path.py==10.3.1=py36_0
  - pcre==8.39=1
  - libpng==1.6.27=0
  - pandocfilters==1.4.2=py36_0
  - lmdb==0.9.21=0
  - libffi==3.2.1=1
  - six==1.10.0=py36_0
  - ipython==5.3.0=py36_0
  - certifi==2016.2.28=py36_0
  - fontconfig==2.12.1=3
  - requests==2.14.2=py36_0
  - scikit-learn==0.18.1=np112py36_1
  - pip==9.0.1=py36_1
  - sip==4.18=py36_0
  - bzip2==1.0.6=3
  - simplegeneric==0.8.1=py36_1
  - llvmlite==0.18.0=py36_0
  - boost==1.61.0=py36_0
  - jupyter_client==5.1.0=py36_0
  - jupyter_console==5.2.0=py36_0
  - markupsafe==1.0=py36_0
  - wheel==0.29.0=py36_0
  - entrypoints==0.2.3=py36_0
  - zeromq==4.1.5=0
  - olefile==0.44=py36_0
  - libiconv==1.14=0
  - coverage==4.3.4=py36_0
  - h5py==2.7.0=np112py36_0
  - pywavelets==0.5.2=np112py36_0
  - notebook==5.0.0=py36_0
  - cytoolz==0.8.2=py36_0
  - dbus==1.10.20=0
  - gflags==2.2.0=1
  - matplotlib==2.0.2=np112py36_0
  - mistune==0.7.4=py36_0
  - tornado==4.5.2=py36_0
  - toolz==0.8.2=py36_0
  - libtiff==4.0.6=3
  - backports.weakref==1.0rc1=py36_0
  - bokeh==0.12.7=py36_0
  - dask==0.14.3=py36_1
  - libgcc==4.8.5=2
  - ipykernel==4.6.1=py36_0
  - protobuf==3.2.0=py36_0
  - glib==2.50.2=1
  - ipywidgets==6.0.0=py36_0
  - numba==0.33.0=np112py36_0
  - bleach==1.5.0=py36_0
  - leveldb==1.20=0
  - widgetsnbextension==3.0.2=py36_0
  - cloudpickle==0.4.0=py36_0
  - numexpr==2.6.2=np112py36_0
  - pexpect==4.2.1=py36_0
  - pyqt==5.6.0=py36_2
  - gmp==6.1.0=0
  - libxcb==1.12=1
  - pyzmq==16.0.2=py36_0
  - werkzeug==0.12.2=py36_0
  - virtualenv==15.1.0=py36_0
  - backports==1.0=py36_0
  - nbconvert==5.2.1=py36_0
  - gst-plugins-base==1.8.0=0
  - expat==2.1.0=0
  - curl==7.52.1=0
  - mkl==2017.0.1=0
  - jpeg==9b=0
  - jinja2==2.9.6=py36_0
  - nose==1.3.7=py36_1
  - libprotobuf==3.2.0=0
  - gcc==4.8.5=7
  - libgfortran==3.0.0=1
  - tk==8.5.18=0
  - hdf5==1.8.17=2
  - jupyter==1.0.0=py36_3
  - mpfr==3.1.5=0
  - caffe==1.0.0rc5=np112py36_0
  - pillow==4.1.1=py36_0
  - tensorflow==1.2.1=py36_0
  - sphinx_rtd_theme==0.2.4=py36_0
  - python-gflags==3.1.1=py36_0
  - sphinx==1.5.6=py36_0
  - jbig==2.1=0
  - terminado==0.6=py36_0
  - xz==5.2.3=0
  - jupyter_core==4.3.0=py36_0
  - python==3.6.2=0
  - scipy==0.19.0=np112py36_0
  - openblas==0.2.19=0
  - markdown==2.6.9=py36_0
  - setuptools==36.4.0=py36_1
  - qt==5.6.2=5
  - sqlalchemy==1.1.9=py36_0
  - readline==6.2=2
  - cmake==3.6.3=0
  - pandas==0.20.1=np112py36_0
  - freetype==2.5.5=2
  - openssl==1.0.2l=0
  - gstreamer==1.8.0=0
  - ptyprocess==0.5.2=py36_0
  - imagesize==0.7.1=py36_0
  - zlib==1.2.11=0
  - babel==2.5.0=py36_0
  - libsodium==1.0.10=0
  - snappy==1.1.6=0
  - pyparsing==2.2.0=py36_0
  - python-dateutil==2.6.1=py36_0
  - scikit-image==0.13.0=np112py36_0
  - pytz==2017.2=py36_0
  - glog==0.3.5=0
  - networkx==1.11=py36_0
  - python-leveldb==0.194=py36_1
  - libxml2==2.9.4=0

如何使它工作？

1 个解决方案

解决方案1
 0  2021-10-22 21:17:27

写了这个简单的dockerfile。

Dockerfile

FROM continuumio/anaconda3:latest
ARG DEBIAN_FRONTEND=noninteractive

WORKDIR /bob
COPY . /bob/
RUN apt update
RUN apt install -y build-essential libopencv-dev python3-opencv ffmpeg libsndfile1 libsndfile-dev wget git tmux

RUN conda env create -f bob.yml
# Make RUN commands use the new environment:
SHELL ["conda", "run", "-n", "bob", "/bin/bash", "-c"]

RUN conda config --add channels conda-forge
RUN conda install -y -c conda-forge/label/broken bob.learn.em

bob.yml

name: bob
channels:
  - conda-forge
dependencies:
  - python=3.5
  - numpy

参考： https : //github.com/zabir-nabil/bob-plda-docker

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