安装 MKmisc package 时依赖关系 limma 不可用

Question

在 R 4.2.1 中安装此 package 时

install.packages("MKmisc")

我有这个 output

Installing package into ‘C:/Users/blahblah/AppData/Local/R/win-library/4.2’
(as ‘lib’ is unspecified)
Warning in install.packages :
  dependency ‘limma’ is not available
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/MKmisc_1.8.zip'
Content type 'application/zip' length 769544 bytes (751 KB)
downloaded 751 KB

package ‘MKmisc’ successfully unpacked and MD5 sums checked

它不起作用，因为我们需要下载 package limma所以让我们这样做

install_github("cran/limma")

但是它给出了一个错误，并且MKmisc package 仍然无法正常工作

我应该怎么做才能处理这个问题？

Answer 1

可以使用BiocManager安装"limma" 。

if (!require("BiocManager", quietly = TRUE))
  install.packages("BiocManager")

BiocManager::install("limma")
install.packages("MKmisc")
# * DONE (MKmisc)
# The downloaded source packages are in
#         ‘/tmp/Rtmphwh6rY/downloaded_packages’