[英]Why can't I replace null values in this excel sheet?
在我的代码中,我运行了一个 t 检验,当对两个零值组运行测试时,它有时会产生“NaN”或“nan”。 我尝试过制作新的数据框,尝试替换 using.replace 并尝试过 fillna() 但没有成功。 在尝试定义新的 dataframe 或在添加新计算后再次读取文件时出现错误。
如何替换这些文件中的空值和“nan”:“significant_report2.xls”或“quant_report2.xls”
import json
import os, sys
import numpy as np
import pandas as pd
import scipy.stats
output_report = "quant_report2.xls"
significant_report = "significant_report2.xls"
output_report_writer = open(output_report, "w")
significant_writer = open(significant_report, "w")
# setup samples grouped by control and treatment
header = []
for idx in control_indices:
header.append(quant_columns[idx])
for idx in treatment_indices:
header.append(quant_columns[idx])
output_report_writer.write("Feature\t%s\tP-value\tctrl_means\tctrl_stdDev\ttx_means\ttx_stdDev\n"%"\t".join(header))
significant_writer.write("Feature\t%s\tP-value\tctrl_means\tctrl_stdDev\ttx_means\ttx_stdDev\n"%"\t".join(header))
feature_list = list(quantitative_data_frame.index)
for feature_idx in range(len(feature_list)):
feature_name = feature_list[feature_idx]
control_values = quantitative_data_frame.iloc[feature_idx, control_indices]
treatment_values = quantitative_data_frame.iloc[feature_idx, treatment_indices]
ttest_stat, ttest_pvalue = scipy.stats.ttest_ind(control_values, treatment_values, equal_var=False)
ctrl_means = scipy.mean(control_values,0)
ctrl_stdDev = scipy.stats.tstd(control_values)
tx_means= scipy.mean(treatment_values,axis=0)
tx_stdDev1 = scipy.stats.tstd(treatment_values)
output_report_writer.write("%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n"%(feature_name,
"\t".join([str(x) for x in list(control_values)]),
"\t".join([str(x) for x in list(treatment_values)]), ttest_pvalue, ctrl_means,ctrl_stdDev,tx_means,tx_stdDev))
significant_writer.write("%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n"%(feature_name,"\t".join([str(x) for x in list(control_values)]), "\t".join([str(x) for x in list(treatment_values)]),ttest_pvalue,ctrl_means,ctrl_stdDev,tx_means,tx_stdDev))
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