[英]Python: add incremental ID in fasta header
I try to create a multi fasta from a .csv file with a incremental ID in the header. 我尝试从.csv文件中在标题中使用增量ID来创建多fasta。 But my script don't works well. 但是我的脚本效果不好。 Any suggestion? 有什么建议吗?
M=open('/home/anna/Scrivania/db_mat/matk_2db_c.csv','r')
M_out=open('/home/anna/Scrivania/db_mat/db_matk_bronx.fas', 'w')
for i in range[1,92]:
num = "m" + str(i)
for line in M:
line1=line.split(',')
ID = line1[0]
SEQ = line1[1]
seq =line1[2]
M_out.write('>'+ num +'_' +ID +'_'+ SEQ +'\n' + seq )
M.close()
M_out.close()
for i,line in enumerate(M,1):
num = "m"+str(i)
line1=line.split(',')
ID = line1[0]
SEQ = line1[1]
seq =line1[2]
M_out.write(...)
this just enumerates through the lines and gives you an index from 1..N where N is the number of lines 这只是枚举行,并为您提供从1..N开始的索引,其中N是行数
before you were iterating over all the nums, so by the time you got to for line in M
num would equal "m91" for all lines 在遍历所有num之前,因此到for line in M
num的for line in M
等于所有行的“ m91”
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