简体   繁体   English

如何修复此Perl库缺少的错误:“在@INC中找不到auto / threads / error.al”?

[英]How to fix this Perl Library Missing Error: “Can't locate auto/threads/error.al in @INC”?

I am running a trinity RNASeq Assembly software on Ubuntu server and the following error is occuring for Pair-end reads input. 我在Ubuntu服务器上运行了Trinity RNASeq Assembly软件,并且对端读取输入发生以下错误。

can't locate auto/threads/error.al in @INC (@INC contains:

I checked for threads library and it's already in the perl library. 我检查了线程库,它已经在perl库中。

Any thoughts on this? 有什么想法吗?

$ perl -V

Summary of my perl5 (revision 5 version 8 subversion 8) configuration:
Platform:
    osname=linux, osvers=2.6.9-42.0.3.elsmp, archname=x86_64-linux-thread-multi
    uname='linux builder6.centos.org 2.6.9-42.0.3.elsmp #1 smp fri oct 6 06:28:26 cdt 2006 x86_64 x86_64 x86_64 gnulinux '
    config_args='-des -Doptimize=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -Dversion=5.8.8 -Dmyhostname=localhost -Dperladmin=root@localhost -Dcc=gcc -Dcf_by=Red Hat, Inc. -Dinstallprefix=/usr -Dprefix=/usr -Dlibpth=/usr/local/lib64
/lib64 /usr/lib64 -Dprivlib=/usr/lib/perl5/5.8.8
-Dsitelib=/usr/lib/perl5/site_perl/5.8.8 -Dvendorlib=/usr/lib/perl5/vendor_perl/5.8.8 -Darchlib=/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi -Dsitearch=/usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi -Dvendorarch=/usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi
-Darchname=x86_64-linux -Dvendorprefix=/usr -Dsiteprefix=/usr -Duseshrplib -Dusethreads -Duseithreads -Duselargefiles -Dd_dosuid -Dd_semctl_semun -Di_db -Ui_ndbm -Di_gdbm -Di_shadow -Di_syslog -Dman3ext=3pm -Duseperlio -Dinstallusrbinperl=n -Ubincompat5005 -Uversiononly -Dpager=/usr/bin/less -isr -Dd_gethostent_r_proto -Ud_endhostent_r_proto -Ud_sethostent_r_proto -Ud_endprotoent_r_proto -Ud_setprotoent_r_proto -Ud_endservent_r_proto -Ud_setservent_r_proto -Dinc_version_list=5.8.7 5.8.6 5.8.5 -Dscriptdir=/usr/bin'
    hint=recommended, useposix=true, d_sigaction=define
    usethreads=define use5005threads=undef useithreads=define usemultiplicity=define
    useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
    use64bitint=define use64bitall=define uselongdouble=undef
    usemymalloc=n, bincompat5005=undef   Compiler:
    cc='gcc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm',
    optimize='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic',
    cppflags='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include -I/usr/include/gdbm'
    ccversion='', gccversion='4.1.1 20070105 (Red Hat 4.1.1-52)', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define   Linker and Libraries:
    ld='gcc', ldflags =''
    libpth=/usr/local/lib64 /lib64 /usr/lib64
    libs=-lresolv -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc
    perllibs=-lresolv -lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
    libc=, so=so, useshrplib=true, libperl=libperl.so
    gnulibc_version='2.5'   Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E -Wl,-rpath,/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/CORE'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic'


Characteristics of this binary (from libperl):    Compile-time
options: MULTIPLICITY PERL_IMPLICIT_CONTEXT
                        PERL_MALLOC_WRAP USE_64_BIT_ALL USE_64_BIT_INT
                        USE_ITHREADS USE_LARGE_FILES USE_PERLIO
                        USE_REENTRANT_API   Built under linux   Compiled at Nov  8 2007 06:49:06   %ENV:
    PERL5LIB="/fs/home/anuphap/usr/lib/perl5:/fs/home/anuphap/usr/lib/perl5/site_perl:/fs/home/anuphap/usr/lib64/perl5:/fs/home/anuphap/usr/lib64/perl5/site_perl"
@INC:
    /fs/home/anuphap/usr/lib/perl5/5.8.8
    /fs/home/anuphap/usr/lib/perl5
    /fs/home/anuphap/usr/lib/perl5/site_perl/5.8.8/x86_64-linux-thread-multi
    /fs/home/anuphap/usr/lib/perl5/site_perl/5.8.8
    /fs/home/anuphap/usr/lib/perl5/site_perl
    /fs/home/anuphap/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi
    /fs/home/anuphap/usr/lib64/perl5/5.8.8
    /fs/home/anuphap/usr/lib64/perl5
    /fs/home/anuphap/usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi
    /fs/home/anuphap/usr/lib64/perl5/site_perl/5.8.8
    /fs/home/anuphap/usr/lib64/perl5/site_perl
    /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi
    /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi
    /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi
    /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi
    /usr/lib/perl5/site_perl/5.8.8
    /usr/lib/perl5/site_perl/5.8.7
    /usr/lib/perl5/site_perl/5.8.6
    /usr/lib/perl5/site_perl/5.8.5
    /usr/lib/perl5/site_perl
    /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi
    /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi
    /usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi
    /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi
    /usr/lib/perl5/vendor_perl/5.8.8
    /usr/lib/perl5/vendor_perl/5.8.7
    /usr/lib/perl5/vendor_perl/5.8.6
    /usr/lib/perl5/vendor_perl/5.8.5
    /usr/lib/perl5/vendor_perl
    /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi
    /usr/lib/perl5/5.8.8

You need to install a version of Perl that has threads support. 您需要安装具有线程支持的Perl版本。 How to install: 如何安装:

 wget http://www.cpan.org/src/5.0/perl-5.20.2.tar.gz
 tar -xzf perl-5.20.2.tar.gz
 cd perl-5.20.2
 ./Configure -des -Dprefix=$HOME/localperl
 make
 make test
 make install

Read both INSTALL and README.yoursystem for more detailed information. 阅读INSTALL和README.yoursystem以获得更多详细信息。

声明:本站的技术帖子网页,遵循CC BY-SA 4.0协议,如果您需要转载,请注明本站网址或者原文地址。任何问题请咨询:yoyou2525@163.com.

 
粤ICP备18138465号  © 2020-2024 STACKOOM.COM