R启动时如何覆盖2GB内存限制

Question

When R boots, the memory limit (as returned by memory.limit) is set to 2GB, regardless of the available memory on the computer. ( I found that out recently ). I imagine that at some point in the booting process, this limit is set to the actually available memory.

This can be seen by printing memory.limit() in the .Rprofile file which is sourced at startup. It prints "2047". On the other hand, when R has booted and I type memory.limit() in the console, I get "16289".

I use a custom .Rprofile file and I need to have access to more than 2GB during bootup.

How can override this limit?

My current workaround is to set the limit myself in the .Rprofile using memory.limit(size=16289) but then I will have to edit this every time I work on a computer with a different amount of RAM which happens fairly often.

Is there an option I can change, a .ini file I can edit, or anything I can do about it?

OS and R version:

> sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

Edit: this is not a duplicate , at least not a duplicate of the proposed question. It is not about managing available memory! I have 16GB of memory and memory.limit() shows that my limit is indeed 16GB.

It all started when I got the warning that I had "reached 2GB memory allocation" (implicating that I had a 2GB memory limit). After investigation, it appears that indeed R limits the memory at 2GB during the startup process .

I want to load my data automatically when R starts, for this I have a small loading script in the .Rprofile . I load more than 2GB data hence I need to have access to my 16GB. My question is about achieving this. This has nothing at all in common with the proposed duplicate, except keywords...

Answer 1

I'm interpreting this as you wanting memory.limit(size=16289) in your .RProfile file, but you don't want to set the specific number every time you change computers with different memory. Why not just dynamically pull the memory you need? In windows:

TOT_MEM <- as.numeric(gsub("\r","",gsub("TotalVisibleMemorySize=","",system('wmic OS get TotalVisibleMemorySize /Value',intern=TRUE)[3])))/1024
memory.limit(size=TOT_MEM)

which would set the available memory to the total memory of the system, or

FREE_MEM <- as.numeric(gsub("\r","",gsub("FreePhysicalMemory=","",system('wmic OS get FreePhysicalMemory /Value',intern=TRUE)[3])))/1024
memory.limit(size=FREE_MEM)

which would set memory.limit to the total available memory on boot.

Place this in RProfile, above where you load your data.