[英]rpy2 can not import R package with rJava--mac
I want to use rpy2 import R package 'iqspr' which I have aleady installed and test on my Rstudio, this package works fine. 我想使用rpy2 import R package'iqspr'我已经安装并在我的Rstudio上测试,这个包工作正常。
Here are the errors I am getting. 这是我得到的错误。
from rpy2.robjects.packages import importr
java=importr('rJava')
iqspr=importr('iqspr')
errors 错误
/Library/Python/2.7/site-packages/rpy2-2.8.3-py2.7-macosx-10.11-intel.egg/rpy2/rinterface/__init__.py:185: RRuntimeWarning: Error : .onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/usr/local/lib/R/3.3/site-library/rJava/libs/rJava.so':
dlopen(/usr/local/lib/R/3.3/site-library/rJava/libs/rJava.so, 6): Library not loaded: @rpath/libjvm.dylib
Referenced from: /usr/local/lib/R/3.3/site-library/rJava/libs/rJava.so
Reason: image not found
warnings.warn(x, RRuntimeWarning)
/Library/Python/2.7/site-packages/rpy2-2.8.3-py2.7-macosx-10.11-intel.egg/rpy2/rinterface/__init__.py:185: RRuntimeWarning: Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/usr/local/lib/R/3.3/site-library/rJava/libs/rJava.so':
dlopen(/usr/local/lib/R/3.3/site-library/rJava/libs/rJava.so, 6): Library not loaded: @rpath/libjvm.dylib
Referenced from: /usr/local/lib/R/3.3/site-library/rJava/libs/rJava.so
Reason: image not found
warnings.warn(x, RRuntimeWarning)
Traceback (most recent call last):
File "/Users/yang/Desktop/Chemical compounds design important materials/chemical_compound_design.py", line 4, in <module>
java=importr('rJava')
File "/Library/Python/2.7/site-packages/rpy2-2.8.3-py2.7-macosx-10.11-intel.egg/rpy2/robjects/packages.py", line 453, in importr
env = _get_namespace(rname)
rpy2.rinterface.RRuntimeError: Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/usr/local/lib/R/3.3/site-library/rJava/libs/rJava.so':
dlopen(/usr/local/lib/R/3.3/site-library/rJava/libs/rJava.so, 6): Library not loaded: @rpath/libjvm.dylib
Referenced from: /usr/local/lib/R/3.3/site-library/rJava/libs/rJava.so
Reason: image not found
Issues involving RStudio and rJava were reported in the past (for example rJava load error in RStudio/R after "upgrading" to OSX Yosemite ), and it is quite possible that the cause is similar. 过去报告了涉及RStudio和rJava的问题(例如,在“升级”到OSX Yosemite之后,RStudio / R中的rJava加载错误 ),原因很可能类似。
Try doing 试着做
export LD_LIBRARY_PATH=/usr/local/lib/R/3.3/site-library/rJava/libs/:{LD_LIBRARY_PATH}
before starting Python. 在开始Python之前。
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