[英]change significant figures in adonis in R?
The adonis function in R apparently defaults to 3 sig-figs in the output p-values. R中的adonis函数显然在输出p值中默认为3 sig-figs。 Can this be altered such that higher sig-figs are output?
可以更改它以便输出更高的信号吗?
I think looking at p-values to more than three significant digits is a very bad idea. 我认为将p值查看为三个以上的有效数字是一个非常糟糕的主意。 However,
adonis
already gives you this, for number of permutations other than 999: 但是,
adonis
已经为您提供了此功能,除了999以外的排列数量:
# Code
library(vegan)
data(dune)
data(dune.env)
## default test by terms
adonis(dune ~ Management*A1, data = dune.env, permutations = 1000)
# Results
Permutation test for adonis under reduced model
Terms added sequentially (first to last)
Permutation: free
Number of permutations: 1000
Call:
adonis(formula = dune ~ Management * A1, data = dune.env, permutations = 1000)
Permutation: free
Number of permutations: 1000
Terms added sequentially (first to last)
Df SumsOfSqs MeanSqs F.Model R2 Pr(>F)
Management 3 1.4686 0.48953 3.2629 0.34161 0.001998 **
A1 1 0.4409 0.44089 2.9387 0.10256 0.016983 *
Management:A1 3 0.5892 0.19639 1.3090 0.13705 0.228771
Residuals 12 1.8004 0.15003 0.41878
Total 19 4.2990 1.00000
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