[英]ODBC connect, get a table in R
Wrestling the whole day with this issue: 用这个问题摔跤了一整天:
I Want to access data on Hadoop (through Hive). 我想访问Hadoop上的数据(通过Hive)。 And installed the ODBC package.
并安装了ODBC包。
I'm able to make connection with the server: 我能够与服务器建立连接:
con <- dbConnect(odbc:: odbc(), "hadoop")
And I am able to see the table that I want to get in R: 我能够看到我想要进入R的表格:
dblistTables(con, schema= "aacs")
The output is: 输出是:
[1] "dev_1" "dev_2"
[3] "dev_3" "dev_4"
I want to have "dev_4" (in a data frame) in my R environment. 我希望在我的R环境中有“dev_4”(在数据框中)。 I tried:
我试过了:
db_orders <- tbl(con, "dev_4")
But I got an error: Table or view not found. 但我收到一个错误:找不到表或视图。 Also the next line lead to nothing.
下一行也没有任何结果。
db_orders <- tbl(con, "aacs.dev_4")
How can I get that data table in my R environment? 如何在R环境中获取该数据表?
EDIT 1 编辑1
Tried to run the next two things: 试图运行接下来的两件事:
result <- dbSendQuery(con, "SELECT * FROM aacs.dev_4")
Received an error: No Space left on device. 收到错误:设备上没有剩余空间。
Ok, so let's reduce the query then: 好的,那么让我们减少查询:
result <- dbSendQuery(con, "SELECT * FROM aacs.dev_4 LIMIT 100")
But again, the same error: 但同样的错误:
Error: <SQL> 'SELECT * FROM aacs.dev_4 limit 100'
nanodbc/nanodbc.cpp:1587: HY000: [Hortonworks][Hardy] (35) Error from server: error code: '2' error message: 'Error while processing statement: FAILED: Execution Error, return code 2 from org.apache.hadoop.hive.ql.exec.tez.TezTask. Vertex failed, vertexName=Reducer 2, vertexId=vertex_15177720341_0081_2_08, diagnostics=[Task failed, taskId=task_15177723341_0081_2_08_000146, diagnostics=[TaskAttempt 0 failed, info=[Error: FS Error in Child JVM:org.apache.hadoop.fs.FSError: java.io.IOException: No space left on device
at org.apache.hadoop.fs.RawLocalFileSystem$LocalFSFileOutputStream.write(RawLocalFileSystem.java:261)
at java.io.BufferedOutputStream.write(BufferedOutputStream.java:122)
at org.apache.hadoop.fs.FSDataOutputStream$PositionCache.write(FSDataOutputStream.java:58)
at java.io.DataOutputStream.write(DataOutputStream.java:107)
at org.apache.tez.runtime.library.common.sort.impl.IFileOutputStream.write(IFil
Anyone an idea how to solve this? 任何人都知道如何解决这个问题? It is strange that there is no memory left.. because I have a lot of space (enough to store the data!).
奇怪的是没有内存......因为我有足够的空间(足以存储数据!)。
EDIT 2 编辑2
As @Florian suggested: 正如@Florian所说:
data <- dbReadTable(con, "aacs.dev_4")
Led to the next error: 导致下一个错误:
Error: <SQL> 'SELECT * FROM `aacs.dev_4`'
nanodbc/nanodbc.cpp:1587: HY000: [Hortonworks][Hardy] (35) Error from server: error code: '2' error message: 'Error while processing statement: FAILED: Execution Error, return code 2 from org.apache.hadoop.hive.ql.exec.tez.TezTask. Vertex failed, vertexName=Reducer 2, vertexId=vertex_1517772023341_0082_1_08, diagnostics=[Task failed, taskId=task_1517772023341_0082_1_08_000236, diagnostics=[TaskAttempt 0 failed, info=[Error: exceptionThrown=org.apache.tez.runtime.library.common.shuffle.orderedgrouped.Shuffle$ShuffleError: error in shuffle in fetcher {Map_4} #10
at org.apache.tez.runtime.library.common.shuffle.orderedgrouped.Shuffle$RunShuffleCallable.callInternal(Shuffle.java:360)
at org.apache.tez.runtime.library.common.shuffle.orderedgrouped.Shuffle$RunShuffleCallable.callInternal(Shuffle.java:337)
at org.apache.tez.common.CallableWithNdc.call(CallableWithNdc.java:36)
at java.util.concurrent.FutureTask.run(FutureTask.java
Try 尝试
x <- dbReadTable(con, "dev_4")
Full working example: 完整的工作示例:
library(DBI)
library(RSQLite)
con <- dbConnect(RSQLite::SQLite(), ":memory:")
dbListTables(con)
dbWriteTable(con, "mtcars", mtcars)
x <- dbReadTable(con, "mtcars")
Hope this helps! 希望这可以帮助!
I know what went wrong... 我知道出了什么问题......
There is an error in the View ("dev_4"). 视图中存在错误(“dev_4”)。 Because when I ran the code:
因为当我运行代码时:
test <- dbReadTable(con, "dev_3")
I got the data frame returned. 我得到了返回的数据框。 Time to connect with the Data engineer... thanks for you help!
是时候与数据工程师联系了......谢谢你的帮助!
我想你在找
data<- dbGetQuery(con,"SELECT * FROM aacs.dev_4 LIMIT 100")
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