[英]Unable to install 'Velocyto.R' from Github
I am a beginner in R trying to analyze my scRNA-seq data with velocyto.R in R studio.我是 R 的初学者,试图在 R 工作室中使用 velocyto.R 分析我的 scRNA-seq 数据。 Following velocyto tutorial, I tried installing velocyto.R as below:按照 velocyto 教程,我尝试安装 velocyto.R,如下所示:
library(devtools)
install_github("velocyto-team/velocyto.R")
But, an error pops up:但是,弹出一个错误:
ERROR: compilation failed for package 'velocyto.R'
removing 'C:/Users/USER/Documents/R/win-library/3.6/velocyto.R'
Error: Failed to install 'velocyto.R' from GitHub:
(converted from warning) installation of package ‘C:/Users/USER/AppData/Local/Temp/RtmpukpRFl/file37346a812b86/velocyto.R_0.6.tar.gz’ had non-zero exit status
Is there anyone to face the same problem described above and succeed in resolving it after all?有没有人面临上述同样的问题并最终成功解决? I desperately need helps!我迫切需要帮助!
Thanks谢谢
As your error log says C:/...
, you probably use Windows.正如您的错误日志所说C:/...
,您可能使用 Windows。 According to velocyto's README it seems that this package runs only on unix-flavored systems with C++11
, Open MP
, boost
, igraph
and hdf5c++
libraries.根据 velocyto 的自述文件,这个 package 似乎只能在带有C++11
、 Open MP
、 boost
、 igraph
和hdf5c++
库的unix 风格的系统上运行。
This can be the problem: read the velocyto's GitHub issue #40 , maybe you'll need to run this under WSL...?这可能是问题所在:阅读 velocyto 的 GitHub 问题#40 ,也许您需要在 WSL 下运行它...?
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