OSError: dlopen(libgdal.so, 6): image not found - macOSX High Sierra 中的 GDAL 安装路径问题
[英]OSError: dlopen(libgdal.so, 6): image not found - GDAL install path issue in macOSX High Sierra
问题描述
Had GDAL installed and working on my machine (macOS running 10.13.6) for a Django project running python 3.6.5.
已为运行 python 3.6.5 的 Django 项目在我的机器（运行 10.13.6 的 macOS）上安装并运行 GDAL。 Didn't have any issues for 2+ years and haven't changed anything (to my knowledge), but now running into an issue when I try to execute a manage.py command where it will err out with OSError: dlopen(libgdal.so, 6): image not found 2 年多来没有任何问题，也没有改变任何东西（据我所知），但现在当我尝试执行manage.py命令时遇到问题，它会因OSError: dlopen(libgdal.so, 6): image not found
Trace:痕迹：
Traceback (most recent call last):
File "manage.py", line 19, in <module>
execute_from_command_line(sys.argv)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/core/management/__init__.py", line 364, in execute_from_command_line
utility.execute()
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/core/management/__init__.py", line 338, in execute
django.setup()
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/__init__.py", line 27, in setup
apps.populate(settings.INSTALLED_APPS)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/apps/registry.py", line 108, in populate
app_config.import_models()
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/apps/config.py", line 202, in import_models
self.models_module = import_module(models_module_name)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 994, in _gcd_import
File "<frozen importlib._bootstrap>", line 971, in _find_and_load
File "<frozen importlib._bootstrap>", line 955, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 665, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 678, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/auth/models.py", line 4, in <module>
from django.contrib.auth.base_user import AbstractBaseUser, BaseUserManager
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/auth/base_user.py", line 52, in <module>
class AbstractBaseUser(models.Model):
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/db/models/base.py", line 124, in __new__
new_class.add_to_class('_meta', Options(meta, app_label))
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/db/models/base.py", line 325, in add_to_class
value.contribute_to_class(cls, name)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/db/models/options.py", line 214, in contribute_to_class
self.db_table = truncate_name(self.db_table, connection.ops.max_name_length())
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/db/__init__.py", line 33, in __getattr__
return getattr(connections[DEFAULT_DB_ALIAS], item)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/db/utils.py", line 211, in __getitem__
backend = load_backend(db['ENGINE'])
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/db/utils.py", line 115, in load_backend
return import_module('%s.base' % backend_name)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/db/backends/postgis/base.py", line 6, in <module>
from .features import DatabaseFeatures
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/db/backends/postgis/features.py", line 1, in <module>
from django.contrib.gis.db.backends.base.features import BaseSpatialFeatures
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/db/backends/base/features.py", line 4, in <module>
from django.contrib.gis.db.models import aggregates
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/db/models/__init__.py", line 3, in <module>
from django.contrib.gis.db.models.aggregates import * # NOQA
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/db/models/aggregates.py", line 1, in <module>
from django.contrib.gis.db.models.fields import ExtentField
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/db/models/fields.py", line 3, in <module>
from django.contrib.gis import forms, gdal
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/forms/__init__.py", line 3, in <module>
from .fields import ( # NOQA
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/forms/fields.py", line 4, in <module>
from django.contrib.gis.geos import GEOSException, GEOSGeometry
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/geos/__init__.py", line 5, in <module>
from .collections import ( # NOQA
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/geos/collections.py", line 11, in <module>
from django.contrib.gis.geos.geometry import GEOSGeometry, LinearGeometryMixin
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/geos/geometry.py", line 11, in <module>
from django.contrib.gis import gdal
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/gdal/__init__.py", line 28, in <module>
from django.contrib.gis.gdal.datasource import DataSource
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/gdal/datasource.py", line 39, in <module>
from django.contrib.gis.gdal.driver import Driver
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/gdal/driver.py", line 5, in <module>
from django.contrib.gis.gdal.prototypes import ds as vcapi, raster as rcapi
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/gdal/prototypes/ds.py", line 9, in <module>
from django.contrib.gis.gdal.libgdal import GDAL_VERSION, lgdal
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/gdal/libgdal.py", line 49, in <module>
lgdal = CDLL(lib_path)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/ctypes/__init__.py", line 348, in __init__
self._handle = _dlopen(self._name, mode)
OSError: dlopen(libgdal.so, 6): image not found
I'd previously set GDAL_LIBRARY_PATH='/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/gdal/libgdal.py' which, again, worked for several years until it didn't (or doesn't), and I can confirm libgdal.py is there on that path.我之前设置GDAL_LIBRARY_PATH='/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/django/contrib/gis/gdal/libgdal.py'再次适用于几年直到它没有（或没有），我可以确认 libgdal.py 在那条路上。 The file does exist:该文件确实存在：
is there something I could potentially modify in /python3.6/ctypes/__init__.py ?我可以在/python3.6/ctypes/__init__.py中修改什么吗？ Where should libgdal.so be? libgdal.so 应该在哪里？
in my .bash_profile I've set:在我的.bash_profile我设置：
export PATH="/usr/local/opt/gdal2/bin:$PATH"
export PYENV_ROOT="$HOME/.pyenv"
export PATH="$PYENV_ROOT/bin:$PATH"
export PATH=/Library/Frameworks/GDAL.framework/Programs:$PATH source /Users/me/.bash_profile
And I can confirm GDAL's installed:我可以确认安装了GDAL：
$ which gdal-config
/Library/Frameworks/GDAL.framework/Programs/gdal-config
$ gdal-config --version
2.3.2
I've tried uninstalling and reinstalling gdal with both pip3 and homebrew.我尝试使用 pip3 和自制软件卸载并重新安装 gdal。
Homebrew GDAL install will err out while installing openblas dependency: Homebrew GDAL install 在安装 openblas 依赖项时会出错：
==> Installing gdal dependency: openblas
==> make CC=gcc-11 FC=gfortran libs netlib shared
Last 15 lines from /Users/chrisbolman/Library/Logs/Homebrew/openblas/01.make:
^~~~~~
<stdin>:2239:16: error: register %xmm16 is only available with AVX512
vaddss %xmm1, %xmm16, %xmm0
^~~~~~
<stdin>:2240:12: error: register %xmm16 is only available with AVX512
vunpckhps %xmm16, %xmm16, %xmm1
^~~~~~
<stdin>:2241:16: error: register %xmm16 is only available with AVX512
vshufps $255, %xmm16, %xmm16, %xmm16
^~~~~~
<stdin>:2243:9: error: register %xmm16 is only available with AVX512
vaddss %xmm16, %xmm0, %xmm0
^~~~~~
make[1]: *** [sgemv_t_SKYLAKEX.o] Error 1
make: *** [libs] Error 1
with Pip3 install throws a large err I haven't seen previously:使用 Pip3 install 会引发我以前从未见过的大错误：
Building wheels for collected packages: gdal
Building wheel for gdal (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /Users/me/.pyenv/versions/3.6.5/bin/python3.6 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-install-qr01e55h/gdal_a0b36daf2b604b5eb109540e4f61fe11/setup.py'"'"'; __file__='"'"'/private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-install-qr01e55h/gdal_a0b36daf2b604b5eb109540e4f61fe11/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-wheel-dzc9_qmw
cwd: /private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-install-qr01e55h/gdal_a0b36daf2b604b5eb109540e4f61fe11/
Complete output (39 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.13-x86_64-3.6
copying gdal.py -> build/lib.macosx-10.13-x86_64-3.6
copying ogr.py -> build/lib.macosx-10.13-x86_64-3.6
copying osr.py -> build/lib.macosx-10.13-x86_64-3.6
copying gdalconst.py -> build/lib.macosx-10.13-x86_64-3.6
copying gnm.py -> build/lib.macosx-10.13-x86_64-3.6
copying gdalnumeric.py -> build/lib.macosx-10.13-x86_64-3.6
creating build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/gnm.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/gdalnumeric.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/osr.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/gdal.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/ogr.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/gdal_array.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/gdalconst.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
Fixing build/lib.macosx-10.13-x86_64-3.6/gdal.py build/lib.macosx-10.13-x86_64-3.6/ogr.py build/lib.macosx-10.13-x86_64-3.6/osr.py build/lib.macosx-10.13-x86_64-3.6/gdalconst.py build/lib.macosx-10.13-x86_64-3.6/gnm.py build/lib.macosx-10.13-x86_64-3.6/gdalnumeric.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gnm.py build/lib.macosx-10.13-x86_64-3.6/osgeo/__init__.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdalnumeric.py build/lib.macosx-10.13-x86_64-3.6/osgeo/osr.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdal.py build/lib.macosx-10.13-x86_64-3.6/osgeo/ogr.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdal_array.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdalconst.py
Skipping optional fixer: ws_comma
Fixing build/lib.macosx-10.13-x86_64-3.6/gdal.py build/lib.macosx-10.13-x86_64-3.6/ogr.py build/lib.macosx-10.13-x86_64-3.6/osr.py build/lib.macosx-10.13-x86_64-3.6/gdalconst.py build/lib.macosx-10.13-x86_64-3.6/gnm.py build/lib.macosx-10.13-x86_64-3.6/gdalnumeric.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gnm.py build/lib.macosx-10.13-x86_64-3.6/osgeo/__init__.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdalnumeric.py build/lib.macosx-10.13-x86_64-3.6/osgeo/osr.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdal.py build/lib.macosx-10.13-x86_64-3.6/osgeo/ogr.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdal_array.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdalconst.py
Skipping optional fixer: ws_comma
running build_ext
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Wno-error=unused-command-line-argument-hard-error-in-future -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/Users/me/.pyenv/versions/3.6.5/include/python3.6m -I/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/2.3/include -c gdal_python_cxx11_test.cpp -o gdal_python_cxx11_test.o
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Wno-error=unused-command-line-argument-hard-error-in-future -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/Users/me/.pyenv/versions/3.6.5/include/python3.6m -I/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/2.3/include -c gdal_python_cxx11_test.cpp -o gdal_python_cxx11_test.o -std=c++11
building 'osgeo._gdal' extension
creating build/temp.macosx-10.13-x86_64-3.6
creating build/temp.macosx-10.13-x86_64-3.6/extensions
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Wno-error=unused-command-line-argument-hard-error-in-future -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/Users/me/.pyenv/versions/3.6.5/include/python3.6m -I/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/2.3/include -c extensions/gdal_wrap.cpp -o build/temp.macosx-10.13-x86_64-3.6/extensions/gdal_wrap.o -std=c++11 -I/Library/Frameworks/GDAL.framework/Versions/2.3/Headers
warning: unknown warning option '-Werror=unused-command-line-argument-hard-error-in-future'; did you mean '-Werror=unused-command-line-argument'? [-Wunknown-warning-option]
1 warning generated.
clang++ -bundle -undefined dynamic_lookup -L/usr/local/opt/readline/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/openssl@1.1/lib -L/Users/me/.pyenv/versions/3.6.5/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/openssl@1.1/lib -L/Users/me/.pyenv/versions/3.6.5/lib -Wno-error=unused-command-line-argument-hard-error-in-future build/temp.macosx-10.13-x86_64-3.6/extensions/gdal_wrap.o -L../../.libs -L../../ -L/Library/Frameworks/GDAL.framework/Versions/2.3/lib -lgdal -o build/lib.macosx-10.13-x86_64-3.6/osgeo/_gdal.cpython-36m-darwin.so
ld: warning: directory not found for option '-L../../.libs'
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/2.3/lib'
ld: library not found for -lgdal
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'clang++' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for gdal
Running setup.py clean for gdal
Failed to build gdal
Installing collected packages: gdal
Running setup.py install for gdal ... error
ERROR: Command errored out with exit status 1:
command: /Users/me/.pyenv/versions/3.6.5/bin/python3.6 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-install-qr01e55h/gdal_a0b36daf2b604b5eb109540e4f61fe11/setup.py'"'"'; __file__='"'"'/private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-install-qr01e55h/gdal_a0b36daf2b604b5eb109540e4f61fe11/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-record-zfnxov4z/install-record.txt --single-version-externally-managed --compile --install-headers /Users/me/.pyenv/versions/3.6.5/include/python3.6m/gdal
cwd: /private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-install-qr01e55h/gdal_a0b36daf2b604b5eb109540e4f61fe11/
Complete output (39 lines):
running install
running build
running build_py
creating build
creating build/lib.macosx-10.13-x86_64-3.6
copying gdal.py -> build/lib.macosx-10.13-x86_64-3.6
copying ogr.py -> build/lib.macosx-10.13-x86_64-3.6
copying osr.py -> build/lib.macosx-10.13-x86_64-3.6
copying gdalconst.py -> build/lib.macosx-10.13-x86_64-3.6
copying gnm.py -> build/lib.macosx-10.13-x86_64-3.6
copying gdalnumeric.py -> build/lib.macosx-10.13-x86_64-3.6
creating build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/gnm.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/gdalnumeric.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/osr.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/gdal.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/ogr.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/gdal_array.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
copying osgeo/gdalconst.py -> build/lib.macosx-10.13-x86_64-3.6/osgeo
Fixing build/lib.macosx-10.13-x86_64-3.6/gdal.py build/lib.macosx-10.13-x86_64-3.6/ogr.py build/lib.macosx-10.13-x86_64-3.6/osr.py build/lib.macosx-10.13-x86_64-3.6/gdalconst.py build/lib.macosx-10.13-x86_64-3.6/gnm.py build/lib.macosx-10.13-x86_64-3.6/gdalnumeric.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gnm.py build/lib.macosx-10.13-x86_64-3.6/osgeo/__init__.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdalnumeric.py build/lib.macosx-10.13-x86_64-3.6/osgeo/osr.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdal.py build/lib.macosx-10.13-x86_64-3.6/osgeo/ogr.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdal_array.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdalconst.py
Skipping optional fixer: ws_comma
Fixing build/lib.macosx-10.13-x86_64-3.6/gdal.py build/lib.macosx-10.13-x86_64-3.6/ogr.py build/lib.macosx-10.13-x86_64-3.6/osr.py build/lib.macosx-10.13-x86_64-3.6/gdalconst.py build/lib.macosx-10.13-x86_64-3.6/gnm.py build/lib.macosx-10.13-x86_64-3.6/gdalnumeric.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gnm.py build/lib.macosx-10.13-x86_64-3.6/osgeo/__init__.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdalnumeric.py build/lib.macosx-10.13-x86_64-3.6/osgeo/osr.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdal.py build/lib.macosx-10.13-x86_64-3.6/osgeo/ogr.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdal_array.py build/lib.macosx-10.13-x86_64-3.6/osgeo/gdalconst.py
Skipping optional fixer: ws_comma
running build_ext
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Wno-error=unused-command-line-argument-hard-error-in-future -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/Users/me/.pyenv/versions/3.6.5/include/python3.6m -I/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/2.3/include -c gdal_python_cxx11_test.cpp -o gdal_python_cxx11_test.o
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Wno-error=unused-command-line-argument-hard-error-in-future -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/Users/me/.pyenv/versions/3.6.5/include/python3.6m -I/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/2.3/include -c gdal_python_cxx11_test.cpp -o gdal_python_cxx11_test.o -std=c++11
building 'osgeo._gdal' extension
creating build/temp.macosx-10.13-x86_64-3.6
creating build/temp.macosx-10.13-x86_64-3.6/extensions
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Wno-error=unused-command-line-argument-hard-error-in-future -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/Users/me/.pyenv/versions/3.6.5/include/python3.6m -I/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/2.3/include -c extensions/gdal_wrap.cpp -o build/temp.macosx-10.13-x86_64-3.6/extensions/gdal_wrap.o -std=c++11 -I/Library/Frameworks/GDAL.framework/Versions/2.3/Headers
warning: unknown warning option '-Werror=unused-command-line-argument-hard-error-in-future'; did you mean '-Werror=unused-command-line-argument'? [-Wunknown-warning-option]
1 warning generated.
clang++ -bundle -undefined dynamic_lookup -L/usr/local/opt/readline/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/openssl@1.1/lib -L/Users/me/.pyenv/versions/3.6.5/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/openssl@1.1/lib -L/Users/me/.pyenv/versions/3.6.5/lib -Wno-error=unused-command-line-argument-hard-error-in-future build/temp.macosx-10.13-x86_64-3.6/extensions/gdal_wrap.o -L../../.libs -L../../ -L/Library/Frameworks/GDAL.framework/Versions/2.3/lib -lgdal -o build/lib.macosx-10.13-x86_64-3.6/osgeo/_gdal.cpython-36m-darwin.so
ld: warning: directory not found for option '-L../../.libs'
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/2.3/lib'
ld: library not found for -lgdal
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'clang++' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /Users/me/.pyenv/versions/3.6.5/bin/python3.6 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-install-qr01e55h/gdal_a0b36daf2b604b5eb109540e4f61fe11/setup.py'"'"'; __file__='"'"'/private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-install-qr01e55h/gdal_a0b36daf2b604b5eb109540e4f61fe11/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-record-zfnxov4z/install-record.txt --single-version-externally-managed --compile --install-headers /Users/me/.pyenv/versions/3.6.5/include/python3.6m/gdal Check the logs for full command output.
I can see the gdal build fail and that it's not finding the directory's and libs it needs, but I'm having difficulty troubleshooting this further - it seems like a symlinks issue or an issue with the pyenv environment or version.我可以看到 gdal 构建失败并且它没有找到它需要的目录和库，但我很难进一步解决这个问题 - 这似乎是一个符号链接问题或 pyenv 环境或版本的问题。
/Library/Frameworks/GDAL.framework exists, so why the ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/2.3/lib' ? /Library/Frameworks/GDAL.framework存在，那么为什么ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/2.3/lib' ？
I am able to install gdal with conda.我可以用 conda 安装 gdal。
If I run conda info --all | grep -i python如果我运行conda info --all | grep -i python conda info --all | grep -i python
I see:我懂了：
python version : 3.7.1.final.0
user-agent : conda/4.11.0 requests/2.25.0 CPython/3.7.1 Darwin/17.7.0 OSX/10.13.6
sys.executable: /miniconda3/bin/python
conda location: /miniconda3/lib/python3.7/site-packages/conda
user site dirs: ~/.local/lib/python2.7
CONDA_PYTHON_EXE: /Users/me/miniconda3/bin/python
PATH: /Users/me/.pyenv/shims:/Users/me/Dropbox/br/venv-br/bin:/usr/local/sbin:/Library/Frameworks/GDAL.framework/Programs:/Library/Frameworks/GDAL.framework/Headers:/Library/Frameworks/GDAL.framework/Headers:/miniconda3/bin:/Library/Frameworks/GDAL.framework/Programs:/Users/me/.pyenv/bin:/usr/local/opt/gdal2/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/Cellar/python@2/2.7.15/Frameworks/Python.framework/Versions/2.7/bin:/opt/X11/bin
Then the problem here is I can see is there's a versioning/path issue where the path is python2.7 but the project is running 3.6.5.然后这里的问题是我可以看到存在版本控制/路径问题，其中路径是 python2.7 但项目正在运行 3.6.5。 Is there a way to do a python version and environment-specific install of gdal?有没有办法进行 Gdal 的 python 版本和特定环境的安装？
if I try, for example, pip3 install pygdal例如，如果我尝试pip3 install pygdal
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-install-shzb0zgv/pygdal_e5bb5d1ae6fc4b249277714a57d6e5bf/setup.py", line 253, in <module>
**extra
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/setuptools/__init__.py", line 129, in setup
return distutils.core.setup(**attrs)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/distutils/core.py", line 148, in setup
dist.run_commands()
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/site-packages/wheel/bdist_wheel.py", line 192, in run
self.run_command('build')
File "/Users/chrisbolman/.pyenv/versions/3.6.5/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/Users/me/.pyenv/versions/3.6.5/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/private/var/folders/qw/bp7lqd0914q6xxqq01017h1h0000gn/T/pip-install-shzb0zgv/pygdal_e5bb5d1ae6fc4b249277714a57d6e5bf/setup.py", line 89, in run
inst_gdal_version, GDAL_VERSION))
__main__.GDALConfigError: Version mismatch 2.3.2 != 3.3.2
----------------------------------------
ERROR: Failed building wheel for pygdal
but I also can't specify a matching version, because if I try to install pip3 install pygdal==2.3.2.10 install throws the same clang err:但我也无法指定匹配的版本，因为如果我尝试安装pip3 install pygdal==2.3.2.10 install 会抛出相同的 clang 错误：
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/2.3/lib'
ld: library not found for -lgdal
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'clang++' failed with exit status 1
Thanks谢谢
1 个解决方案
解决方案1
0 2022-01-18 12:28:37
The immediate problem is that you uninstalled GDAL and haven't been able to successfully reinstall it (both pip and homebrew failed to compile the files that will result in libgdal.so being generated. Using the django.contrib.gis.gdal Python package requires having the GDAL library installed successfully. The installers expect this library to be locatable/loadable using the "normal" methods for loading libraries and thus don't respect the GDAL_LIBRARY_PATH environment variable. The immediate problem is that you uninstalled GDAL and haven't been able to successfully reinstall it (both pip and homebrew failed to compile the files that will result in libgdal.so being generated. Using the django.contrib.gis.gdal Python package requires成功安装了GDAL库安装程序希望该库可以使用“正常”方法加载库来定位/加载，因此不尊重GDAL_LIBRARY_PATH环境变量。
Take a look at the instructions to build GDAL from source.查看从源代码构建 GDAL 的说明。 It specifically mentions the error you're having.它特别提到了您遇到的错误。 Also note on that page that GDAL_LIBRARY_PATH should be set to the path of libgdal.so , not libgdal.py , though you mention somehow the latter was working for you it may be worth fixing once you've built/installed the GDAL library.另请注意，在该页GDAL_LIBRARY_PATH应该设置为libgdal.so的路径，而不是libgdal.py ，尽管您提到后者以某种方式为您工作，一旦您构建/安装了 GDAL 库，它可能值得修复。
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