[英]Pass underscore in knitr R code
I need to call a database that has underscores in the table names in an R chunk in knitr. 我需要调用一个数据库,该数据库在knitr中的R块中的表名中有下划线。 There are a couple thousand table names, and changing the names would be a huge hassle.
有几千个表名,更改名称将是一个巨大的麻烦。 Something like:
就像是:
<<classRun,fig=FALSE,print=FALSE,echo=FALSE>>=
getdat = function(nbr1,nbr2){
library(RODBC)
database.dsn1<-c("db")
database.user1<-c("username")
database.password1<-c("password")
channel<-odbcConnect(database.dsn1, database.user1, database.password1)
dat = sqlQuery(channel,paste("select * from table_",nbr1,"_",nbr2, sep=""))
}
@
<< results='asis', echo = FALSE>>=
dat = getdat(10,20)
print(dat)
@
I get the error that I am missing a $ ("Missing $ inserted") because of the underscore in "table_10_20". 由于“table_10_20”中的下划线,我得到错误,我错过了$(“Missing $ inserted”)。 I have played around a lot with adding in '\\$ \\', and '\\$ \\', you name it.
添加'\\ $ \\'和'\\ $ \\',我已经玩了很多,你可以命名。 Also played around with cat(), and paste(), and single quotes, and double quotes.
还使用了cat()和paste(),单引号和双引号。 Any suggestions?
有什么建议? Thanks in advance for your help.
在此先感谢您的帮助。 I am running Ubuntu 11.10, and calling knitr from RStudio with pdfLaTeX, if that matters.
我正在运行Ubuntu 11.10,并使用pdfLaTeX从RStudio调用knitr,如果这很重要的话。
Chances are you have a column name with an underscore in it. 有可能你有一个带有下划线的列名。
Recall that results='asis'
just dumps all the output as-is into the tex document. 回想一下
results='asis'
只是将所有输出原样转储到tex文档中。
For example, this is a reproducible example of your problem: 例如,这是您的问题的可重现示例:
% test.Rnw
\documentclass[a4paper]{article}
\begin{document}
<<classRun, fig=FALSE, print=FALSE, echo=FALSE>>=
table_10_20 <- data.frame(col_1=1:10, col_2=runif(10))
@
<<results='asis', echo=F>>=
print(table_10_20)
@
\end{document}
If I run this through knitr
I get the "Missing $
inserted". 如果我通过
knitr
运行这个,我得到“Missing $
inserted”。
If I look at the .tex file that gets produced, I see: 如果我查看生成的.tex文件,我会看到:
% test.Rnw
\documentclass[a4paper]{article}
.... lots of tex ....
\begin{document}
col_1 col_2
1 1 0.69699
2 2 0.12988
3 3 0.19662
4 4 0.04299
5 5 0.08750
6 6 0.72969
7 7 0.19818
8 8 0.27855
9 9 0.81806
10 10 0.56135
\end{document}
See how the column names col_1
and col_2
are just dumped as-is into the file? 查看列名称
col_1
和col_2
如何按原样转储到文件中? Well, in LaTeX an underscore has a special meaning (subscript), which is only valid in maths mode, hence the LaTeX compiler tries to put the maths mode delimiters ( $
) around the word, giving your error. 好吧,在LaTeX中,下划线有一个特殊的含义(下标),它只在数学模式下有效,因此LaTeX编译器试图在数字周围放置数学模式分隔符(
$
),给出错误。
In your case, you have a few options depending on what you want for your output. 在您的情况下,根据您的输出需要,您有几个选项。
Use \\begin{verbatim}
with results='asis'
to protect the underscores. 使用
\\begin{verbatim}
和results='asis'
来保护下划线。 This will dump your output into a verbatim
environment. 这会将您的输出转储到
verbatim
环境中。
\\begin{verbatim} <<results='asis', echo=F>>= print(table_10_20) @ \\end{verbatim}
Use results='markup'
: this is like a verbatim environment except sweave colours the output. 使用
results='markup'
:这就像一个逐字环境,除了sweave为输出着色。 By default it'll put a comment mark ( ##
) in front of every line; 默认情况下,它会在每行前面添加注释标记(
##
); to remove this use comment=NA
. 删除此使用
comment=NA
。 (You can't see too well how this pic is different from the above; it is the same except it has a grey background to distinguish it from the rest of the document. It's the same markup as when you use echo=T
). (你不能太清楚这张照片与上面的不同之处;除了它有一个灰色背景以区别于文档的其余部分之外,它是相同的。它与你使用
echo=T
时的标记相同)。
<<results='markup', comment=NA, echo=F>>= print(table_10_20) @
The above two simply print your table as-is in fixed with font. 上面两个只是用字体固定打印你的表格。 If you want a proper latex table, you can use a package like
xtable
, which can convert a data.frame
(& similar) ino proper LaTeX (or HTML) markup. 如果你想要一个合适的乳胶表,你可以使用像
xtable
这样的包,它可以转换data.frame
(和类似的)ino正确的LaTeX(或HTML)标记。 I think there are other packages that can do this too but for the moment they escape me. 我认为还有其他一些包可以做到这一点,但目前他们逃脱了我。 You use
results='asis'
here. 你在这里使用
results='asis'
。 (See the documentation for more details, you really can control every aspect of what gets printed in the table and how): (有关详细信息,请参阅文档,您真的可以控制表中打印内容的各个方面以及如何):
<<results='asis', echo=F>>= library(xtable) print(xtable(table_10_20), include.rownames=FALSE) @
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