[英]How to include a print statement from another method inside the class
我的问题是如何更改代码,以使其打印出第一条打印行以及从testBuildCodonMap
方法打印的行? 当前未打印出的打印行是System.out.println(s+"\\t"+codonMap.get(s));
。 我希望将其包含在其他打印语句中。
import java.util.*;
import edu.duke.*;
public class CodonCount {
private HashMap<String,Integer> codonMap;
public CodonCount() {
codonMap = new HashMap<String,Integer>();
}
private void buildCodonMap(int start, String dna) {
//clear out map before building
codonMap.clear();
//This method will build a new map of codons mapped to
//their counts from the string dna with the reading frame
//with the position start (a value of 0, 1, or 2).
for (int index=start; dna.length() - index > 3;index+=3) {
String currentCodon = dna.substring(index,index+3);
if (!codonMap.containsKey(currentCodon)) {
codonMap.put(currentCodon,1);
}
else {
codonMap.put(currentCodon,codonMap.get(currentCodon)+1);
}
}
}
private String getMostCommonCodon() {
//get the codon in a reading frame that has the largest count
//this method assumes the HashMap of codons to counts has already been built
int currentHigh = 0;
String mostCommonCodon = "";
for (String s : codonMap.keySet()) {
int currentCount = codonMap.get(s);
if (currentCount > currentHigh) {
mostCommonCodon = s;
currentHigh = currentCount;
}
}
return mostCommonCodon;
}
private void printCodonCounts(int start, int end) {
//This method prints all the codons in the HashMap along with their
//counts if their count is between start and end, inclusive.
for (String s : codonMap.keySet()) {
if (codonMap.get(s) >= start && codonMap.get(s) <= end) {
System.out.println(s+"\t"+codonMap.get(s));
}
}
}
public void testBuildCodonMap() {
FileResource fileResource = new FileResource();
String dna = fileResource.asString();
dna = dna.toUpperCase();
for (int index=0;index <= 2;index++) {
System.out.println("\nTesting with start position "+index+":\n");
buildCodonMap(index,dna);
String mostCommonCodon = getMostCommonCodon();
System.out.println("Total unique codons found: "+codonMap.size());
System.out.println("\nMost common codon: "+mostCommonCodon
+"\t"+codonMap.get(mostCommonCodon));
printCodonCounts(4,8);
}
}
}
测试样本文件: CGTTCAAGTTCAA
编辑:我希望输出看起来像这样:
以0开头的阅读框会产生3个唯一密码子
最常见的密码子是TCA,计数为2
1至5(含)之间的密码子计数为:
CGT 1
三氯乙酸
AGT 1
以1开头的阅读框会产生2个唯一的密码子
最常见的密码子是带有2的CAA
1至5(含)之间的密码子计数为:
CAA 2
GTT 2
以2开头的阅读框会产生2个唯一密码子
最常见的密码子是TTC,计数为2
1至5(含)之间的密码子计数为:
TTC 2
AAG 1
我知道了! 行printCodonCounts(4,8);
内部public void testBuildCodonMap()
方法的内部需要更改为printCodonCounts(1,3);
。 这样就可以执行方法private void printCodonCounts(int start, int end)
内部的print语句。
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