[英]knitcitations gives pandoc-citeproc error
我有以下文檔,我試圖用Rstudio編譯:
---
output:
word_document:
pandoc_args: [
"--biblio", "references.bib"
]
---
```{r}
library("knitcitations")
cleanbib()
```
This is a citation citet("10.1098/rspb.2013.1372"):
```{r}
citet("10.1098/rspb.2013.1372")
```
```{r}
write.bibtex(file="references.bib")
```
```{r}
summary(cars)
```
當我運行knit時,它會編譯.md文件,但是pandoc會出錯:
processing file: toy.Rmd
|...................... | 33%
ordinary text without R code
|............................. | 44%
label: unnamed-chunk-2
|.................................... | 56%
ordinary text without R code
|........................................... | 67%
label: unnamed-chunk-3
|................................................... | 78%
ordinary text without R code
|.......................................................... | 89%
label: unnamed-chunk-4
|.................................................................| 100%
ordinary text without R code
/Applications/RStudio.app/Contents/MacOS/pandoc/pandoc toy.utf8.md --to docx --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash-implicit_figures --output toy.docx --highlight-style tango --biblio references.bib
output file: toy.knit.md
pandoc: Error running filter pandoc-citeproc
pandoc-citeproc not found in path
Error: pandoc document conversion failed with error 83
Execution halted
生成的引用文件是references.bib:
@Article{Boettiger_2013,
doi = {10.1098/rspb.2013.1372},
url = {http://dx.doi.org/10.1098/rspb.2013.1372},
year = {2013},
month = {Jul},
publisher = {The Royal Society},
volume = {280},
number = {1766},
pages = {20131372-20131372},
author = {C. Boettiger and A. Hastings},
title = {No early warning signals for stochastic transitions: insights from large deviation theory},
journal = {Proceedings of the Royal Society B: Biological Sciences},
}
錯誤消息表明在$ PATH中找不到pandoc-citeproc(即/ usr / bin /等)。一種解決方法是從嵌入在Rstudio中的pandoc-citeproc創建一個鏈接並將其放在/ usr / local中/ bin目錄。
在終端:
sudo ln /Applications/RStudio.app/Contents/MacOS/pandoc/pandoc-citeproc /usr/local/bin/pandoc-citeproc
cd /usr/local/bin
chown root /usr/local/bin/pandoc-citeproc
chgrp wheel /usr/local/bin/pandoc-citeproc
pandoc結果:
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