[英]mysql/connector python query works in mysql but not python
我已經看到以下兩個答案:
兩種解決方案都不適合我。 我正在運行下面的代碼,該代碼每次都完整無誤地完成,但根本不會修改mysql表Compounds
,並且我已驗證輸入文件的格式與我的mysql表的格式完全匹配,並且正確定界,不能為空。
import os, sys
import mysql.connector
from mysql.connector import errorcode
from mysql.connector.constants import ClientFlag
TABLE_NAME = "Compounds"
fullDataFile = "data/compounds/parsed/fullData.csv"
cnx = mysql.connector.connect(user='kharland', passwd='password', db='mydb', client_flags=[ClientFlag.LOCAL_FILES])
cursor = cnx.cursor()
print "loading data file: %s/%s" % (os.getcwd(), fullDataFile)
try:
cursor.execute = (
"LOAD DATA LOCAL INFILE '%s/%s'"
" REPLACE"
" INTO TABLE `%s`"
" FIELDS TERMINATED BY '^'"
" LINES TERMINATED BY '\n'"
" (PUBCHEM_COMPOUND_CID,"
" PUBCHEM_COMPOUND_CANONICALIZED,"
" PUBCHEM_CACTVS_COMPLEXITY,"
" PUBCHEM_CACTVS_HBOND_ACCEPTOR,"
" PUBCHEM_CACTVS_HBOND_DONOR,"
" PUBCHEM_CACTVS_ROTATABLE_BOND,"
" PUBCHEM_CACTVS_SUBSKEYS,"
" PUBCHEM_IUPAC_INCHI,"
" PUBCHEM_IUPAC_INCHIKEY,"
" PUBCHEM_EXACT_MASS,"
" PUBCHEM_MOLECULAR_FORMULA,"
" PUBCHEM_MOLECULAR_WEIGHT,"
" PUBCHEM_OPENEYE_CAN_SMILES,"
" PUBCHEM_OPENEYE_ISO_SMILES,"
" PUBCHEM_CACTVS_TPSA,"
" PUBCHEM_MONOISOTOPIC_WEIGHT,"
" PUBCHEM_TOTAL_CHARGE,"
" PUBCHEM_HEAVY_ATOM_COUNT,"
" PUBCHEM_ATOM_DEF_STEREO_COUNT,"
" PUBCHEM_ATOM_UDEF_STEREO_COUNT,"
" PUBCHEM_BOND_DEF_STEREO_COUNT,"
" PUBCHEM_BOND_UDEF_STEREO_COUNT,"
" PUBCHEM_ISOTOPIC_ATOM_COUNT,"
" PUBCHEM_COMPONENT_COUNT,"
" PUBCHEM_CACTVS_TAUTO_COUNT);" %
(os.getcwd(), fullDataFile, TABLE_NAME))
cnx.commit()
except mysql.connector.Error as e:
sys.stderr.write("x Failed loading data: {}\n".format(e))
但是,如果我將此查詢打印到終端,然后在mysql中運行,則工作正常。 mysql lib是否可能無法運行實際查詢是有原因,還是我錯過了一些函數調用?
MySQL不接受標識符的綁定占位符。 在這種情況下,表的名稱。 那必須是SQL文本的一部分。 您只能使用綁定占位符提供值 。
你可以這樣做:
SELECT t.id FROM mytable t WHERE t.foo = :val
^^^^
但這是無效的 :
SELECT t.id FROM :mytable t WHERE t.foo = 'bar'
^^^^^^^^
您可以在之前的步驟中執行sprintf
-type操作,以生成包含實際表名的SQL文本(字符串),然后將該SQL文本(字符串)提交給MySQL。
到達該cursor.execute
,需要SQL文本將表名作為字符串的一部分包括在內 。 (文件名也可能必須指定為文字,並且不能用作占位符,但是我不確定。我確定的是表名。)
作為測試,請嘗試對表名“ Compounds”進行硬編碼,然后將文件名硬編碼為SQL文本...
cursor.execute = (
"LOAD DATA LOCAL INFILE '/opt/data/compounds/parsed/fullData.csv'"
" REPLACE"
" INTO TABLE `Compounds`"
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