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[英]Should the use of subprocess.Popen and subprocess.call be avoided if possible?
[英]subprocess.call() or subprocess.Popen for generating/using output files
我正在嘗試編寫Python代碼以與使用命令行提示的另一個軟件進行交互。 執行命令行提示后,將在目錄中生成多個輸出文件,軟件將使用這些輸出文件進行一些計算。 另外,我的程序的其余部分使用那些輸出文件。 目前,我運行我的python代碼,然后手動輸入命令行提示符,然后調用我的其余代碼,這工作正常,但是當我嘗試放置:
subprocess.call(['sfit4Layer0.py', '-bv5', '-fs'], shell=False)
進入我的文件,它沒有正確執行(不生成輸出文件)。
當我創建上面的代碼時,它是自己的單獨的python代碼,並在我的代碼的第一部分之后立即調用它 - 它也有效。
根據我的輸出,我確信問題是這樣的:調用生成多個文件,然后使用這些文件進行計算,但是,它沒有生成正確的文件,因此我的輸出中出現錯誤。 所以在某種程度上它似乎超越了自己:不等待在進行計算之前生成輸出文件,但同樣,當我在程序之外單獨運行此命令時,它也可以工作。 關於為什么會這樣的想法?
我究竟做錯了什么? 我是否需要指定目錄(輸出文件是否可以放在我的計算機中的其他位置)? 我需要使用subprocess.Popen嗎? 我已經搜索過互聯網,但我是新的(ish)Python並且徹底難倒。
歡迎任何建議。 謝謝!
編輯:對於那些問,這里是sfit4Layer0.py代碼:
#! /usr/bin/python
##! /usr/local/python-2.7/bin/python
##! /usr/bin/python
##! /usr/bin/python
# Change the above line to point to the location of your python executable
#----------------------------------------------------------------------------------------
# Name:
# sfit4Layer0.py
#
# Purpose:
# This file is the zeroth order running of sfit4. It accomplishes the following:
# 1) Calls pspec to convert binary spectra file (bnr) to ascii (t15asc)
# 2) Calls hbin to gather line parameters from hitran
# 3) Calls sfit4
# 4) Calls error analysis from Layer1mods.py
# 5) Clean outputs from sfit4 call
#
#
# External Subprocess Calls:
# 1) pspec executable file from pspec.f90
# 2) hbin executable file from hbin.f90
# 3) sfit4 executable file from sfit4.f90
# 4) errAnalysis from Layer1mods.py
#
#
#
# Notes:
# 1) Options include:
# -i <dir> : Optional. Data directory. Default is current working directory
# -b <dir/str> : Optional. Binary directory. Default is hard-code.
# -f <str> : Run flags, h = hbin, p = pspec, s = sfit4, e = error analysis, c = clean
#
#
# Usage:
# ./sfit4Layer0.py [options]
#
#
# Examples:
# 1) This example runs hbin, pspec, sfit4, error analys, and cleans working directory prior to execution
# ./sfit4Layer0.py -f hpsec
#
# 2) This example just runs sfit4
# ./sfit4Layer0.py -f s
#
# 3) This example cleans the output file created by sfit4 in directory (/User/home/datafiles/) which is not the current directory
# ./sfit4Layer0.py -i /User/home/datafiles/ -f c
#
# Version History:
# Created, May, 2013 Eric Nussbaumer (ebaumer@ucar.edu)
#
#
# License:
# Copyright (c) 2013-2014 NDACC/IRWG
# This file is part of sfit4.
#
# sfit4 is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# any later version.
#
# sfit4 is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with sfit4. If not, see <http://www.gnu.org/licenses/>
#
#----------------------------------------------------------------------------------------
#---------------
# Import modules
#---------------
import sys
import os
import getopt
import sfitClasses as sc
from Layer1Mods import errAnalysis
from Tkinter import Tk
from tkFileDialog import askopenfilename
#------------------------
# Define helper functions
#------------------------
def usage(binDirVer):
print 'sfit4Layer0.py -f <str> [-i <dir> [-b <dir/str> ] \n'
print '-i <dir> Data directory. Optional: default is current working directory'
print '-f <str> Run Flags: Necessary: h = hbin, p = pspec, s = sfit4, e = error analysis, c = clean'
print '-b <dir/str> Binary sfit directory. Optional: default is hard-coded in main(). Also accepts v1, v2, etc.'
for ver in binDirVer:
print ' {}: {}'.format(ver,binDirVer[ver])
sys.exit()
def main(argv):
#----------------
# Initializations
#----------------
#------------
# Directories
#------------
wrkDir = os.getcwd() # Set current directory as the data directory
binDir = '/data/bin' # Default binary directory. Used of nothing is specified on command line
binDirVer = {
'v1': '/data/ebaumer/Code/sfit-core-code/src/', # Version 1 for binary directory (Eric)
'v2': '/data/tools/400/sfit-core/src/', # Version 2 for binary directory (Jim)
'v3': '/Users/jamesw/FDP/sfit/400/sfit-core/src/', # Version 2 for binary directory (Jim)
'v4': '/home/ebaumer/Code/sfit4/src/',
'v5': '/Users/allisondavis/Documents/Summer2016/sfit4_0.9.4.3/src'
}
#----------
# Run flags
#----------
hbinFlg = False # Flag to run hbin
pspecFlg = False # Flag to run pspec
sfitFlg = False # Flag to run sfit4
errFlg = False # Flag to run error analysis
clnFlg = False # Flag to clean directory of output files listed in ctl file
#--------------------------------
# Retrieve command line arguments
#--------------------------------
try:
opts, args = getopt.getopt(sys.argv[1:], 'i:b:f:?')
except getopt.GetoptError as err:
print str(err)
usage(binDirVer)
sys.exit()
#-----------------------------
# Parse command line arguments
#-----------------------------
for opt, arg in opts:
# Data directory
if opt == '-i':
wrkDir = arg
sc.ckDir(wrkDir,exitFlg=True)
# Binary directory
elif opt == '-b':
if not sc.ckDir(arg,exitFlg=False,quietFlg=True):
try: binDir = binDirVer[arg.lower()]
except KeyError: print '{} not a recognized version for -b option'.format(arg); sys.exit()
else: binDir = arg
if not(binDir.endswith('/')): binDir = binDir + '/'
# Run flags
elif opt == '-f':
flgs = list(arg)
for f in flgs:
if f.lower() == 'h': hbinFlg = True
elif f.lower() == 'p': pspecFlg = True
elif f.lower() == 's': sfitFlg = True
elif f.lower() == 'e': errFlg = True
elif f.lower() == 'c': clnFile = True
else: print '{} not an option for -f ... ignored'.format(f)
elif opt == '-?':
usage(binDirVer)
sys.exit()
else:
print 'Unhandled option: {}'.format(opt)
sys.exit()
#--------------------------------------
# If necessary change working directory
# to directory with input data.
#--------------------------------------
if os.path.abspath(wrkDir) != os.getcwd(): os.chdir(wrkDir)
if not(wrkDir.endswith('/')): wrkDir = wrkDir + '/'
#--------------------------
# Initialize sfit ctl class
#--------------------------
ctlFileName = wrkDir + 'sfit4.ctl'
if sc.ckFile(wrkDir+'sfit4.ctl'): ctlFileName = wrkDir + 'sfit4.ctl'
else:
Tk().withdraw()
ctlFileName = askopenfilename(initialdir=wrkDir,message='Please select sfit ctl file')
ctlFile = sc.CtlInputFile(ctlFileName)
ctlFile.getInputs()
#------------------------
# Initialize sb ctl class
#------------------------
if errFlg:
if sc.ckFile(wrkDir+'sb.ctl'): sbCtlFileName = wrkDir + 'sb.ctl'
else:
TK().withdraw()
sbCtlFileName = askopenfilename(initialdir=wrkDir,message='Please select sb ctl file')
sbCtlFile = sc.CtlInputFile(sbCtlFileName)
sbCtlFile.getInputs()
#---------------------------
# Clean up output from sfit4
#---------------------------
if clnFlg:
for k in ctlFile.inputs['file.out']:
if 'file.out' in k:
try: os.remove(wrkDir + ctlFile.inputs[k])
except OSError: pass
#----------
# Run pspec
#----------
if pspecFlg:
print '*************'
print 'Running pspec'
print '*************'
rtn = sc.subProcRun( [binDir + 'pspec'] )
#----------
# Run hbin
#----------
if hbinFlg:
print '************'
print 'Running hbin'
print '************'
rtn = sc.subProcRun( [binDir + 'hbin'] )
#----------
# Run sfit4
#----------
if sfitFlg:
print '************'
print 'Running sfit'
print '************'
rtn = sc.subProcRun( [binDir + 'sfit4'] )
#-------------------
# Run error analysis
#-------------------
if errFlg:
print '**********************'
print 'Running error analysis'
print '**********************'
rtn = errAnalysis(ctlFile,sbCtlFile,wrkDir)
if __name__ == "__main__":
main(sys.argv[1:])
嘗試一下: subprocess.call('sfit4Layer0.py -bv5 -fs', shell=True)
如果您嘗試從python腳本調用另一個python腳本,則subprocess.call()方法適合您的操作。
我建議你轉
subprocess.call(['sfit4Layer0.py', '-bv5', '-fs'], shell=True)
希望這個解決方案有效
當您想要將STDIN / STDOUT或STDERR從一個進程傳輸到另一個進程時,通常會使用Popen。
此外,當您編寫文件時,請確保將文件或目錄路徑創建為絕對路徑,這將有助於您將文件始終放在所需位置。
快樂的編碼。
subprocess.call(['sfit4Layer0.py', '-bv5', '-fs'], shell=False)
如果腳本確實包含shebang並且不可執行,請嘗試:
subprocess.call(['python','/path/to/script/sfit4Layer0.py','-bv5','-fs'], shell=False)
如果腳本是可執行的並且包含shebang嘗試:
subprocess.call(['/path/to/script/sfit4Layer0.py -bv5 -fs'], shell=True)
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