在CUDA 8.0和cuDNN 5.1的Ubuntu 16.04上Caffe安裝錯誤

Question

我正在使用支持GTX 1080的UBUNUTU 16.04 Xenial PC進行深度學習。 但是，從BLVC或NVIDIA來源編譯caffe時，我遇到的問題很少。 安裝完所有依賴項並鏈接了全局變量后，Im仍然缺少一些可編譯caffe的東西。 我已經構建了OpenCV 3.1.0和OpenBLAS等。現在從https://github.com/BVLC/caffe克隆並輸入

cd caffe
 mkdir build
cd build 
cmake ..

給我以下錯誤-

-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Boost version: 1.58.0
-- Found the following Boost libraries:
--   system
--   thread
--   filesystem
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Found GFlags: /usr/include  
-- Found gflags  (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libgflags.so)
-- Found Glog: /usr/include  
-- Found glog    (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libglog.so)
-- Found PROTOBUF: /usr/lib/x86_64-linux-gnu/libprotobuf.so  
-- Found PROTOBUF Compiler: /usr/bin/protoc
CMake Error at /usr/local/share/cmake-3.2/Modules/FindPackageHandleStandardArgs.cmake:138 (message):
  Could NOT find HDF5 (missing: HDF5_INCLUDE_DIRS)
Call Stack (most recent call first):
  /usr/local/share/cmake-3.2/Modules/FindPackageHandleStandardArgs.cmake:374 (_FPHSA_FAILURE_MESSAGE)
  /usr/local/share/cmake-3.2/Modules/FindHDF5.cmake:360 (find_package_handle_standard_args)
  cmake/Dependencies.cmake:27 (find_package)
  CMakeLists.txt:43 (include)


-- Configuring incomplete, errors occurred!
See also "/home/xhuv/testcaffe/caffe/build/CMakeFiles/CMakeOutput.log".
See also "/home/xhuv/testcaffe/caffe/build/CMakeFiles/CMakeError.log".

我正在使用Python 3.5.2。 ::也安裝了Anaconda 4.2.0（64位），Python版本2.7。 我已經根據以下內容編輯了Makefile.config

## Refer to http://caffe.berkeleyvision.org/installation.html
# Contributions simplifying and improving our build system are welcome!

# cuDNN acceleration switch (uncomment to build with cuDNN).
USE_CUDNN := 1

# CPU-only switch (uncomment to build without GPU support).
# CPU_ONLY := 1

# uncomment to disable IO dependencies and corresponding data layers
 USE_OPENCV := 3
# USE_LEVELDB := 0
# USE_LMDB := 0

# uncomment to allow MDB_NOLOCK when reading LMDB files (only if necessary)
#   You should not set this flag if you will be reading LMDBs with any
#   possibility of simultaneous read and write
# ALLOW_LMDB_NOLOCK := 1

# To customize your choice of compiler, uncomment and set the following.
# N.B. the default for Linux is g++ and the default for OSX is clang++
# CUSTOM_CXX := g++

# CUDA directory contains bin/ and lib/ directories that we need.
CUDA_DIR := /usr/local/cuda
# On Ubuntu 14.04, if cuda tools are installed via
# "sudo apt-get install nvidia-cuda-toolkit" then use this instead:
# CUDA_DIR := /usr

# CUDA architecture setting: going with all of them.
# For CUDA < 6.0, comment the *_50 lines for compatibility.
CUDA_ARCH := -gencode arch=compute_20,code=sm_20 \
        -gencode arch=compute_20,code=sm_21 \
        -gencode arch=compute_30,code=sm_30 \
        -gencode arch=compute_35,code=sm_35 \
        -gencode arch=compute_50,code=sm_50 \
        -gencode arch=compute_50,code=compute_50

# BLAS choice:
# atlas for ATLAS (default)
# mkl for MKL
# open for OpenBlas
BLAS := open
# Custom (MKL/ATLAS/OpenBLAS) include and lib directories.
# Leave commented to accept the defaults for your choice of BLAS
# (which should work)!
BLAS_INCLUDE := /usr/local/include
BLAS_LIB := /usr/local/lib

# Homebrew puts openblas in a directory that is not on the standard search path
#BLAS_INCLUDE := $(shell brew --prefix openblas)/include
#BLAS_LIB := $(shell brew --prefix openblas)/lib

# This is required only if you will compile the matlab interface.
# MATLAB directory should contain the mex binary in /bin.
# MATLAB_DIR := /usr/local
# MATLAB_DIR := /Applications/MATLAB_R2012b.app

# NOTE: this is required only if you will compile the python interface.
# We need to be able to find Python.h and numpy/arrayobject.h.
PYTHON_INCLUDE := /usr/include/python2.7 \
        /usr/lib/python2.7/dist-packages/numpy/core/include
# Anaconda Python distribution is quite popular. Include path:
# Verify anaconda location, sometimes it's in root.
ANACONDA_HOME := $(HOME)/anaconda2
PYTHON_INCLUDE := $(ANACONDA_HOME)/include \
         $(ANACONDA_HOME)/include/python2.7 \
         $(ANACONDA_HOME)/lib/python2.7/site-packages/numpy/core/include \

# We need to be able to find libpythonX.X.so or .dylib.
#PYTHON_LIB := /usr/lib
PYTHON_LIB := $(ANACONDA_HOME)/lib

# Homebrew installs numpy in a non standard path (keg only)
PYTHON_INCLUDE += $(dir $(shell python -c 'import numpy.core; print(numpy.core.__file__)'))/include
PYTHON_LIB += $(shell brew --prefix numpy)/lib

# Uncomment to support layers written in Python (will link against Python libs)
#WITH_PYTHON_LAYER := 1

# Whatever else you find you need goes here.
INCLUDE_DIRS := $(PYTHON_INCLUDE) /usr/local/include
LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/lib /usr/lib
LIBRARY_DIRS += /usr/lib/x86_64-linux-gnu/
LIBRARY_DIRS += $(ANACONDA_HOME)/lib

# If Homebrew is installed at a non standard location (for example your home directory) and you use it for general dependencies
#INCLUDE_DIRS += $(shell brew --prefix)/include
#LIBRARY_DIRS += $(shell brew --prefix)/lib

# Uncomment to use `pkg-config` to specify OpenCV library paths.
# (Usually not necessary -- OpenCV libraries are normally installed in one of the above $LIBRARY_DIRS.)
# USE_PKG_CONFIG := 1

BUILD_DIR := build
DISTRIBUTE_DIR := distribute

# Uncomment for debugging. Does not work on OSX due to https://github.com/BVLC/caffe/issues/171
# DEBUG := 1

# The ID of the GPU that 'make runtest' will use to run unit tests.
TEST_GPUID := 0

# enable pretty build (comment to see full commands)
Q ?= @ 

# shared object suffix name to differentiate branches
LIBRARY_NAME_SUFFIX := -nv

可能是什么錯誤？ 請幫忙！！

Answer 1

您首先需要使用此命令安裝HD5F sudo apt-get install libhdf5-serial-dev並將添加的庫目錄添加到此+LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/lib /usr/lib /usr/lib/x86_64-linux-gnu/hdf5/serial/但庫將在其擴展名中添加其版本，因此您需要創建具有官方名稱的符號鏈接，caffe在執行類似$ sudo ln -s /usr/lib/x86_64-linux-gnu/libhdf5_serial.so.10 /usr/lib/x86_64-linux-gnu/libhdf5.so $ sudo ln -s /usr/lib/x86_64-linux-gnu/libhdf5_serial_hl.so.10 /usr/lib/x86_64-linux-gnu/libhdf5_hl.so構建時將查找$ sudo ln -s /usr/lib/x86_64-linux-gnu/libhdf5_serial.so.10 /usr/lib/x86_64-linux-gnu/libhdf5.so $ sudo ln -s /usr/lib/x86_64-linux-gnu/libhdf5_serial_hl.so.10 /usr/lib/x86_64-linux-gnu/libhdf5_hl.so 。希望對您$ sudo ln -s /usr/lib/x86_64-linux-gnu/libhdf5_serial.so.10 /usr/lib/x86_64-linux-gnu/libhdf5.so $ sudo ln -s /usr/lib/x86_64-linux-gnu/libhdf5_serial_hl.so.10 /usr/lib/x86_64-linux-gnu/libhdf5_hl.so幫助

Answer 2

Caffe安裝對於該體系結構可能是一個挑戰。 anaconda的問題在於它沒有使用Caffe所需的python相同的protobuf軟件包來獲得google協議支持。 對於Anaconda_Caffe安裝，請參考此存儲庫 。

Answer 3

在Ubuntu 16.04上，HDF5的安裝目錄似乎與cmake的FindHDF5模塊搭配使用不太好。 我花了好幾個小時來研究如何“很好地”解決此問題，但最終只是修補了cmake/Dependencies.cmake文件，以使caffe能夠正確編譯。

無論如何，這是補丁： ubuntu1604_caffe_hdf5.patch

而且，如果您正在尋找一種將其包含在構建腳本（如Dockerfile）中的快速方法，我已建立了一個git.io鏈接，您可以在基本caffe目錄中運行該文件來修補cmake/Dependencies.cmake ：

wget -O- https://git.io/vHcP3 | patch -p0