在 ubuntu VM 中安裝 devtools package

Question

我嘗試在 Ubuntu 16.04 VM 中安裝 devtools package，但我錯了。

其他包我試過安裝成功

但是我無法安裝它，控制台中的過程是這樣的：

> install.packages("devtools")
Installing package into ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2’
(as ‘lib’ is unspecified)
also installing the dependencies ‘curl’, ‘openssl’, ‘httr’, ‘git2r’

--2018-01-26 22:14:08--  https://cran.rstudio.com/src/contrib/curl_3.1.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 54.230.27.181
Connecting to cran.rstudio.com (cran.rstudio.com)|54.230.27.181|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 366086 (358K) [application/x-gzip]
Saving to: ‘/tmp/RtmpIF4wAz/downloaded_packages/curl_3.1.tar.gz’

     0K .......... .......... .......... .......... .......... 13% 1017K 0s
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   300K .......... .......... .......... .......... .......... 97% 2,84M 0s
   350K .......                                               100% 19,6M=0,2s

2018-01-26 22:14:09 (2,18 MB/s) - ‘/tmp/RtmpIF4wAz/downloaded_packages/curl_3.1.tar.gz’ saved [366086/366086]

--2018-01-26 22:14:09--  https://cran.rstudio.com/src/contrib/openssl_0.9.9.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 54.230.27.181
Connecting to cran.rstudio.com (cran.rstudio.com)|54.230.27.181|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1112927 (1,1M) [application/x-gzip]
Saving to: ‘/tmp/RtmpIF4wAz/downloaded_packages/openssl_0.9.9.tar.gz’

     0K .......... .......... .......... .......... ..........  4% 1,02M 1s
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  1050K .......... .......... .......... ......               100% 7,47M=2,8s

2018-01-26 22:14:13 (394 KB/s) - ‘/tmp/RtmpIF4wAz/downloaded_packages/openssl_0.9.9.tar.gz’ saved [1112927/1112927]

--2018-01-26 22:14:13--  https://cran.rstudio.com/src/contrib/httr_1.3.1.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 54.230.27.181
Connecting to cran.rstudio.com (cran.rstudio.com)|54.230.27.181|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 147593 (144K) [application/x-gzip]
Saving to: ‘/tmp/RtmpIF4wAz/downloaded_packages/httr_1.3.1.tar.gz’

     0K .......... .......... .......... .......... .......... 34%  934K 0s
    50K .......... .......... .......... .......... .......... 69%  100K 0s
   100K .......... .......... .......... .......... ....      100%  342K=0,7s

2018-01-26 22:14:15 (212 KB/s) - ‘/tmp/RtmpIF4wAz/downloaded_packages/httr_1.3.1.tar.gz’ saved [147593/147593]

--2018-01-26 22:14:15--  https://cran.rstudio.com/src/contrib/git2r_0.21.0.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 54.230.27.181
Connecting to cran.rstudio.com (cran.rstudio.com)|54.230.27.181|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1155512 (1,1M) [application/x-gzip]
Saving to: ‘/tmp/RtmpIF4wAz/downloaded_packages/git2r_0.21.0.tar.gz’

     0K .......... .......... .......... .......... ..........  4% 1,06M 1s
    50K .......... .......... .......... .......... ..........  8% 1,52M 1s
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  1100K .......... .......... ........                        100% 83,9M=0,6s

2018-01-26 22:14:16 (1,93 MB/s) - ‘/tmp/RtmpIF4wAz/downloaded_packages/git2r_0.21.0.tar.gz’ saved [1155512/1155512]

--2018-01-26 22:14:16--  https://cran.rstudio.com/src/contrib/devtools_1.13.4.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 54.230.27.181
Connecting to cran.rstudio.com (cran.rstudio.com)|54.230.27.181|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 486348 (475K) [application/x-gzip]
Saving to: ‘/tmp/RtmpIF4wAz/downloaded_packages/devtools_1.13.4.tar.gz’

     0K .......... .......... .......... .......... .......... 10% 1,10M 0s
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   400K .......... .......... .......... .......... .......... 94% 3,66M 0s
   450K .......... .......... ....                            100% 8,73M=0,3s

2018-01-26 22:14:17 (1,63 MB/s) - ‘/tmp/RtmpIF4wAz/downloaded_packages/devtools_1.13.4.tar.gz’ saved [486348/486348]

* installing *source* package ‘curl’ ...
** package ‘curl’ successfully unpacked and MD5 sums checked
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Using PKG_CFLAGS=
Using PKG_LIBS=-lcurl
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libcurl was not found. Try installing:
 * deb: libcurl4-openssl-dev (Debian, Ubuntu, etc)
 * rpm: libcurl-devel (Fedora, CentOS, RHEL)
 * csw: libcurl_dev (Solaris)
If libcurl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘curl’
* removing ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2/curl’
Warning in install.packages :
  installation of package ‘curl’ had non-zero exit status
* installing *source* package ‘openssl’ ...
** package ‘openssl’ successfully unpacked and MD5 sums checked
Using PKG_CFLAGS=
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because openssl was not found. Try installing:
 * deb: libssl-dev (Debian, Ubuntu, etc)
 * rpm: openssl-devel (Fedora, CentOS, RHEL)
 * csw: libssl_dev (Solaris)
 * brew: openssl@1.1 (Mac OSX)
If openssl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘openssl’
* removing ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2/openssl’
Warning in install.packages :
  installation of package ‘openssl’ had non-zero exit status
* installing *source* package ‘git2r’ ...
** package ‘git2r’ successfully unpacked and MD5 sums checked
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of void*... 8
checking for library containing inflate... -lz
checking for library containing EVP_EncryptInit... no
checking for openssl... no
configure: error: in `/tmp/RtmpQ9e11v/R.INSTALL82977388520/git2r':
configure: error: 
  ---------------------------------------------
   The OpenSSL library that is required to
   build git2r was not found.

   Please install:
     libssl-dev    (package on e.g. Debian and Ubuntu)
     openssl-devel (package on e.g. Fedora, CentOS and RHEL)
     openssl       (Homebrew package on OS X)
   and try again.

   If the OpenSSL library is installed on
   your system but the git2r configuration
   is unable to find it, you can specify
   the include and lib path to OpenSSL with:
   R CMD INSTALL --configure-args='--with-libssl-include=INCLUDE_PATH --with-libssl-lib=LIB_PATH' git2r
  ---------------------------------------------
See `config.log' for more details
ERROR: configuration failed for package ‘git2r’
* removing ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2/git2r’
Warning in install.packages :
  installation of package ‘git2r’ had non-zero exit status
ERROR: dependencies ‘curl’, ‘openssl’ are not available for package ‘httr’
* removing ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2/httr’
Warning in install.packages :
  installation of package ‘httr’ had non-zero exit status
ERROR: dependencies ‘httr’, ‘git2r’ are not available for package ‘devtools’
* removing ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2/devtools’
Warning in install.packages :
  installation of package ‘devtools’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/RtmpIF4wAz/downloaded_packages’

知道如何安裝它嗎？ 如果我使用 Rstudio 而不是問題是一樣的 我使用終端 R

還從 github 安裝汽車 package，因為我在工具列表中找不到它->安裝包有問題：

> library(devtools)
> install_github("cran/car")
Downloading GitHub repo cran/car@master
from URL https://api.github.com/repos/cran/car/zipball/master
Installing car
--2018-01-26 22:39:07--  https://cran.rstudio.com/src/contrib/pbkrtest_0.4-7.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 54.230.27.181
Connecting to cran.rstudio.com (cran.rstudio.com)|54.230.27.181|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 156406 (153K) [application/x-gzip]
Saving to: ‘/tmp/RtmpIF4wAz/pbkrtest_0.4-7.tar.gz’

     0K .......... .......... .......... .......... .......... 32% 1,16M 0s
    50K .......... .......... .......... .......... .......... 65% 1,45M 0s
   100K .......... .......... .......... .......... .......... 98% 3,79M 0s
   150K ..                                                    100% 8,52M=0,09s

2018-01-26 22:39:07 (1,68 MB/s) - ‘/tmp/RtmpIF4wAz/pbkrtest_0.4-7.tar.gz’ saved [156406/156406]

Installing pbkrtest
--2018-01-26 22:39:11--  https://cran.rstudio.com/src/contrib/lme4_1.1-15.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 54.230.27.181
Connecting to cran.rstudio.com (cran.rstudio.com)|54.230.27.181|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 3610706 (3,4M) [application/x-gzip]
Saving to: ‘/tmp/RtmpIF4wAz/lme4_1.1-15.tar.gz’

     0K .......... .......... .......... .......... ..........  1% 1,05M 3s
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  3500K .......... .......... ......                          100% 97,2M=0,6s

2018-01-26 22:39:12 (6,14 MB/s) - ‘/tmp/RtmpIF4wAz/lme4_1.1-15.tar.gz’ saved [3610706/3610706]

Installing lme4
--2018-01-26 22:39:20--  https://cran.rstudio.com/src/contrib/nloptr_1.0.4.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 54.230.27.181
Connecting to cran.rstudio.com (cran.rstudio.com)|54.230.27.181|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 353957 (346K) [application/x-gzip]
Saving to: ‘/tmp/RtmpIF4wAz/nloptr_1.0.4.tar.gz’

     0K .......... .......... .......... .......... .......... 14% 1,11M 0s
    50K .......... .......... .......... .......... .......... 28%  106K 1s
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   250K .......... .......... .......... .......... .......... 86%  628K 0s
   300K .......... .......... .......... .......... .....     100% 2,39M=0,8s

2018-01-26 22:39:22 (448 KB/s) - ‘/tmp/RtmpIF4wAz/nloptr_1.0.4.tar.gz’ saved [353957/353957]

Installing nloptr
'/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL  \
  '/tmp/RtmpIF4wAz/devtools756410ec724/nloptr' --library='/home/stefan/R/x86_64-pc-linux-gnu-library/3.2' --install-tests 

ERROR: failed to lock directory ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2’ for modifying
Try removing ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2/00LOCK-nloptr’
Installation failed: Command failed (3)
'/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL '/tmp/RtmpIF4wAz/devtools7561eb5da54/lme4'  \
  --library='/home/stefan/R/x86_64-pc-linux-gnu-library/3.2' --install-tests 

ERROR: dependency ‘nloptr’ is not available for package ‘lme4’
* removing ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2/lme4’
Installation failed: Command failed (1)
'/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL  \
  '/tmp/RtmpIF4wAz/devtools75623bf595c/pbkrtest' --library='/home/stefan/R/x86_64-pc-linux-gnu-library/3.2' --install-tests 

ERROR: dependency ‘lme4’ is not available for package ‘pbkrtest’
* removing ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2/pbkrtest’
Installation failed: Command failed (1)
'/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL  \
  '/tmp/RtmpIF4wAz/devtools75635e8f138/cran-car-4f39fce' --library='/home/stefan/R/x86_64-pc-linux-gnu-library/3.2' --install-tests 

ERROR: dependency ‘pbkrtest’ is not available for package ‘car’
* removing ‘/home/stefan/R/x86_64-pc-linux-gnu-library/3.2/car’
Installation failed: Command failed (1)

Answer 1

當然，答案就在您粘貼的輸出中。 您需要在操作系統中（而不是在 R 中）安裝以下依賴項：

libcurl4-openssl-dev libssl-dev

要安裝它們，請在終端中運行：

sudo apt-get update
sudo apt-get install libcurl4-openssl-dev
sudo apt-get install libssl-dev

然后轉到 R 並嘗試重新安裝“devtools”。

Answer 2

猜猜您還需要添加sudo apt-get install libxml2-dev 。 這是因為 devtools 也需要包 xml2。

Answer 3

從 Ubuntu 20.0 開始，devtools 可用作 r-cran ubuntu 包。 https://packages.ubuntu.com/groovy/r-cran-devtools

使用sudo apt-get install r-cran-devtools

Answer 4

對於 Ubuntu 18.04 為我工作：

apt-get install libzmq3-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev build-essential libcurl4-openssl-dev libxml2-dev libssl-dev libfontconfig1-dev