在 redHat CentOs 7 上安裝 R。我無法克服的幾個錯誤和依賴項

Question

我正在使用 redhat centos 7 並嘗試安裝 R：

sudo yum install R

返回：

Error: Package: R-java-devel-3.5.1-1.el7.x86_64 (epel)
           Requires: java-devel
           Available: 1:java-1.7.0-openjdk-devel-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
               java-devel = 1:1.7.0
           Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
               java-devel = 1:1.7.0
           Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
               java-devel = 1:1.7.0
           Available: 1:java-1.7.0-openjdk-devel-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
               java-devel = 1:1.7.0
           Available: 1:java-1.8.0-openjdk-devel-1.8.0.161-2.b14.el7.i686 (centos-base-prod)
               java-devel = 1:1.8.0
           Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
               java-devel = 1:1.8.0
           Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
               java-devel = 1:1.8.0
           Available: 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 (centos-updates-prod)
               java-devel = 1:1.8.0
Error: Package: R-java-3.5.1-1.el7.x86_64 (epel)
           Requires: java-headless
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
               java-headless = 1:1.7.0
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
               java-headless = 1:1.7.0
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
               java-headless = 1:1.7.0
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
               java-headless = 1:1.7.0
           Available: 1:java-1.8.0-openjdk-headless-1.8.0.161-2.b14.el7.i686 (centos-base-prod)
               java-headless = 1:1.8.0
           Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
               java-headless = 1:1.8.0
           Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
               java-headless = 1:1.8.0
           Available: 1:java-1.8.0-openjdk-headless-1.8.0.181-3.b13.el7_5.i686 (centos-updates-prod)
               java-headless = 1:1.8.0

根據我嘗試安裝 java-devel 的錯誤消息：

sudo yum install java-devel

這使：

Package 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.x86_64 is obsoleted by 2000:gd-jdk8-1.8.0_92-fcs.x86_64 which is already installed
Nothing to do

如何安裝 java-devel 以安裝 R？

[編輯]

爪哇版：

java -version java version "1.8.0_92" Java(TM) SE Runtime Environment (build 1.8.0_92-b14) Java HotSpot(TM) 64-Bit Server VM (build 25.92-b14, mixed mode)

[編輯]

還嘗試了以下方法：

sudo yum install R-java-devel

這使：

Error: Package: R-java-devel-3.5.1-1.el7.x86_64 (epel)
           Requires: java-devel
           Available: 1:java-1.7.0-openjdk-devel-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
               java-devel = 1:1.7.0
           Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
               java-devel = 1:1.7.0
           Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
               java-devel = 1:1.7.0
           Available: 1:java-1.7.0-openjdk-devel-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
               java-devel = 1:1.7.0
           Available: 1:java-1.8.0-openjdk-devel-1.8.0.161-2.b14.el7.i686 (centos-base-prod)
               java-devel = 1:1.8.0
           Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
               java-devel = 1:1.8.0
           Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
               java-devel = 1:1.8.0
           Available: 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 (centos-updates-prod)
               java-devel = 1:1.8.0

還嘗試了特定版本：

sudo yum install java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686

其中返回：“Package 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 is obsoleted by 2000:gd-jdk8-1.8.0_92-fcs.x86_64 which has been installed做”。

我怎樣才能克服這些問題？ 也歡迎標簽建議。

[編輯] 根據評論，這里是yum repolist的輸出

Loaded plugins: changelog, fastestmirror, priorities, versionlock
Determining fastest mirrors
 * epel: mirror.prgmr.com
centos-base-prod                                                                                                             9911/9911
centos-cpm-prod                                                                                                                125/125
centos-epel-prod                                                                                                           15503/15503
centos-extras-prod                                                                                                             402/402
centos-hips-prod                                                                                                                 72/72
centos-itsec-prod                                                                                                                82/82
centos-pbis-prod                                                                                                                 43/43
centos-puppet3-prod                                                                                                            242/242
centos-serverspec-prod                                                                                                           11/11
centos-updates-prod                                                                                                          1348/1348
centos_itsec_prod                                                                                                                82/82
collectd-enterprise                                                                                                            232/232
epel                                                                                                                       12743/12743
gd-prod-centos-v6-64bit-scl                                                                                                  1121/1121
gd-prod-centos-v6-64bit-tms                                                                                                    163/163
gd-prod-centos-v7-64bit-base                                                                                                 9911/9911
gd-prod-centos-v7-64bit-epel                                                                                               15503/15503
gd-prod-centos-v7-64bit-extras                                                                                                 402/402
gd-prod-centos-v7-64bit-hips                                                                                                     72/72
gd-prod-centos-v7-64bit-pan                                                                                                      83/83
gd-prod-centos-v7-64bit-sensu                                                                                                2113/2113
gd-prod-centos-v7-64bit-updates                                                                                              1348/1348
gdsnow                                                                                                                             3/3
gutils                                                                                                                           11/11
prod_centos_7_noarch_gd-snow                                                                                                       3/3
sensu-enterprise                                                                                                             4560/4560
yumrepos                                                                                                                         87/87
repo id                                                  repo name                                                              status
!centos-base-prod/x86_64                                 centos-base-prod                                                       9,910+1
!centos-cpm-prod/x86_64                                  centos-cpm-prod                                                            125
!centos-epel-prod/x86_64                                 centos-epel-prod                                                        15,503
!centos-extras-prod/x86_64                               centos-extras-prod                                                         402
!centos-hips-prod/x86_64                                 centos-hips-prod                                                            72
!centos-itsec-prod/x86_64                                centos-itsec-prod                                                           82
!centos-pbis-prod/x86_64                                 centos-pbis-prod                                                            43
!centos-puppet3-prod/x86_64                              Centos Puppet prod Packages                                                242
!centos-sclo-rh/x86_64                                   CentOS-7 - SCLo rh                                                       8,090
!centos-serverspec-prod/x86_64                           centos-serverspec-prod                                                      11
!centos-updates-prod/x86_64                              centos-updates-prod                                                    1,347+1
!centos_itsec_prod/x86_64                                centos_itsec_prod                                                           82
!collectd-enterprise/x86_64                              Enterprise Collectd Packages                                             231+1
!epel/x86_64                                             Extra Packages for Enterprise Linux 7 - x86_64                          12,743
!gd-prod-centos-v6-64bit-scl                             gd-prod-centos-v6-64bit-scl                                              1,121
!gd-prod-centos-v6-64bit-tms                             gd-prod-centos-v6-64bit-tms                                                163
!gd-prod-centos-v7-64bit-base                            gd-prod-centos-v7-64bit-base                                           9,910+1
!gd-prod-centos-v7-64bit-epel                            gd-prod-centos-v7-64bit-epel                                            15,503
!gd-prod-centos-v7-64bit-extras                          gd-prod-centos-v7-64bit-extras                                             402
!gd-prod-centos-v7-64bit-hips                            gd-prod-centos-v7-64bit-hips                                                72
!gd-prod-centos-v7-64bit-pan                             gd-prod-centos-v7-64bit-pan                                               82+1
!gd-prod-centos-v7-64bit-sensu                           gd-prod-centos-v7-64bit-sensu                                            2,113
!gd-prod-centos-v7-64bit-updates                         gd-prod-centos-v7-64bit-updates                                        1,347+1
!gdsnow                                                  prod_centos_7_noarch_gd-snow                                                 3
!gutils/x86_64                                           GUtils Packages                                                             11
!prod_centos_7_noarch_gd-snow                            prod_centos_7_noarch_gd-snow                                                 3
!prod_centos_7_x86_64_saltstack                          prod_centos_7_x86_64_saltstack                                           76+26
!sensu-enterprise/x86_64                                 Enterprise Sensu Packages                                                4,560
!yumrepos                                                Enterprise Yum Repos Repo                                                   87
repolist: 84,336

[編輯]

根據評論僅啟用 epel、base 和更新存儲庫yum repolist all ：

之后我再次嘗試使用sudo yum install R

這產生了：

Error: Package: libRmath-devel-3.5.0-1.el7.x86_64 (centos-epel-prod)
           Requires: libRmath = 3.5.0-1.el7
           Installed: libRmath-3.5.1-1.el7.x86_64 (@epel)
               libRmath = 3.5.1-1.el7
           Available: libRmath-3.5.0-1.el7.x86_64 (centos-epel-prod)
               libRmath = 3.5.0-1.el7
Error: Package: R-java-3.5.0-1.el7.x86_64 (centos-epel-prod)
           Requires: R-core = 3.5.0-1.el7
           Installed: R-core-3.5.1-1.el7.x86_64 (@epel)
               R-core = 3.5.1-1.el7
           Available: R-core-3.5.0-1.el7.x86_64 (centos-epel-prod)
               R-core = 3.5.0-1.el7
Error: Package: 1:java-1.7.0-openjdk-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
           Requires: java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
           Installing: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.191-2.6.15.4.el7_5
Error: Package: R-java-devel-3.5.0-1.el7.x86_64 (centos-epel-prod)
           Requires: java-devel
Error: Package: R-core-devel-3.5.0-1.el7.x86_64 (centos-epel-prod)
           Requires: R-core = 3.5.0-1.el7
           Installed: R-core-3.5.1-1.el7.x86_64 (@epel)
               R-core = 3.5.1-1.el7
           Available: R-core-3.5.0-1.el7.x86_64 (centos-epel-prod)
               R-core = 3.5.0-1.el7
Error: Package: 1:java-1.8.0-openjdk-1.8.0.171-7.b10.el7.x86_64 (centos-updates-prod)
           Requires: java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.171-7.b10.el7
           Available: 1:java-1.8.0-openjdk-headless-1.8.0.161-2.b14.el7.x86_64 (centos-base-prod)
               java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.161-2.b14.el7
           Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
              ~java-1.8.0-openjdk-headless(x86-32) = 1:1.8.0.171-7.b10.el7
Error: Package: 1:java-1.7.0-openjdk-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
           Requires: java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
           Installing: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.191-2.6.15.4.el7_5
Error: Package: 1:java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 (centos-updates-prod)
           Requires: java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.171-8.b10.el7_5
           Available: 1:java-1.8.0-openjdk-headless-1.8.0.161-2.b14.el7.x86_64 (centos-base-prod)
               java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.161-2.b14.el7
           Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
              ~java-1.8.0-openjdk-headless(x86-32) = 1:1.8.0.171-7.b10.el7
           Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
              ~java-1.8.0-openjdk-headless(x86-32) = 1:1.8.0.171-8.b10.el7_5
Error: Package: 1:java-1.7.0-openjdk-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
           Requires: java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
           Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
           Installing: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
               java-1.7.0-openjdk-headless = 1:1.7.0.191-2.6.15.4.el7_5
 You could try using --skip-broken to work around the problem
 You could try running: rpm -Va --nofiles --nodigest

Answer 1

因此，您似乎從可能的“奇數”位置安裝了沖突的軟件包。

1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 is obsoleted by 2000:gd-jdk8-1.8.0_92-fcs.x86_64告訴我們gd-jdk8提供相同的像java-1.8.0-openjdk-devel這樣的東西，但R不喜歡這個名字，想要一個合適的java和java-devel包。

您需要做的第一件事是禁用您已啟用的所有這些奇怪的存儲庫，並僅使用epel base和updates庫。

如果您導航到； /etc/yum.repos.d/你應該找到一個裝滿文件的文件夾。 打開它們並將enabled=1更改為enabled=0這將禁用它們。

現在您應該能夠yum erase gd-jdk8並將其與任何 deps 一起刪除。 然后你應該能夠做yum install java-devel這應該給你正確的版本。

完成此操作后，您將需要降級R-core和libRmath軟件包，因為從我們的聊天中可以看出，您已了解如何安裝R也需要的更新版本。

做; yum downgrade R-core libRmath並向 deps 說“是”。 這應該會讓你找到你需要的正確版本。

最后執行yum install R並且幸運的話它應該會為您安裝！

看起來很多包都是由內部存儲庫或其他東西提供的，因為您有很多以“gd”為前綴的東西，但實際上並不是人們所期望的gd ！ 我想和你的運營/IT 團隊談談，看看發生了什么。

最后請記住，您禁用了所有其他存儲庫 - 好吧，您可能希望現在重新啟用它們，但是...如果您進行yum update確保您知道它將要做什么，因為它可能會嘗試用那些替換內容' gd' 前綴的包。

Yum 確實告訴你is obsoleted line 有什么問題。 但是要深入了解 deps 需要更多的知識，尤其是當您不確定自己在看什么時，而且它不是 CentOS 的“庫存”安裝！