安裝包“Rmpfr”在 R 中具有非零退出狀態
[英]Installation of package ‘Rmpfr’ had non-zero exit status in R
問題描述
我無法在 R 中安裝 Rmpfr 包。我正在嘗試使用 CVXR 包來解決 OR 問題。 由於需要 Rmpfr 包作為先決條件，我嘗試使用 install.packages('Rmpfr') 安裝相同的包。 我得到的錯誤是：
錯誤：dyn.load（文件，DLLpath = DLLpath，...）中“Rmpfr”的包或命名空間加載失敗：無法加載共享對象“/home/karunyavenugopalan/R/x86_64-redhat-linux-gnu-library/ 3.6/00LOCK-Rmpfr/00new/Rmpfr/libs/Rmpfr.so'：libmpfr.so.6：無法打開共享對象文件：沒有這樣的文件或目錄錯誤：加載失敗執行停止錯誤：加載失敗*刪除'/home/ karunyavenugopalan/R/x86_64-redhat-linux-gnu-library/3.6/Rmpfr' install.packages 中的警告：安裝包 'Rmpfr' 的退出狀態非零
操作系統：Fedora 31 RStudio 版本：1.2.5019
我已經使用 yum install mpfr-devel 安裝了 mpfr
請協助。
2 個解決方案
解決方案1
3 2019-12-24 09:52:50
如果您瀏覽CRAN 存儲庫的Rmpfr部分，您會注意到這個包需要gmp和mpfr作為系統要求，然后再安裝 R 包。
在 Fedora 30 上對我有用的是我確保安裝了 -devel 版本，所以：
sudo dnf install gmp-devel mpfr-devel
首先我嘗試安裝軟件包：
$ R
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-redhat-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> install.packages("Rmpfr")
Installing package into ‘/home/romunov/R/x86_64-redhat-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
also installing the dependency ‘gmp’
trying URL 'https://cran.wu.ac.at/src/contrib/gmp_0.5-13.5.tar.gz'
Content type 'application/x-gzip' length 133364 bytes (130 KB)
==================================================
downloaded 130 KB
trying URL 'https://cran.wu.ac.at/src/contrib/Rmpfr_0.7-2.tar.gz'
Content type 'application/x-gzip' length 626031 bytes (611 KB)
==================================================
downloaded 611 KB
* installing *source* package ‘gmp’ ...
** package ‘gmp’ successfully unpacked and MD5 sums checked
** using staged installation
creating cache ./config.cache
checking for __gmpz_ui_sub in -lgmp... no
configure: error: GNU MP not found, or not 4.1.4 or up, see http://gmplib.org
ERROR: configuration failed for package ‘gmp’
* removing ‘/home/romunov/R/x86_64-redhat-linux-gnu-library/3.6/gmp’
ERROR: dependency ‘gmp’ is not available for package ‘Rmpfr’
* removing ‘/home/romunov/R/x86_64-redhat-linux-gnu-library/3.6/Rmpfr’
The downloaded source packages are in
‘/tmp/RtmpstRn5N/downloaded_packages’
Warning messages:
1: In install.packages("Rmpfr") :
installation of package ‘gmp’ had non-zero exit status
2: In install.packages("Rmpfr") :
installation of package ‘Rmpfr’ had non-zero exit status
安裝gmp-devel
$ sudo dnf install gmp-devel
Last metadata expiration check: 0:59:19 ago on Tue 24 Dec 2019 09:44:08 AM CET.
Dependencies resolved.
=========================================================================================================================================================================
Package Architecture Version Repository Size
=========================================================================================================================================================================
Installing:
gmp-devel x86_64 1:6.1.2-10.fc30 fedora 173 k
Installing dependencies:
gmp-c++ x86_64 1:6.1.2-10.fc30 fedora 17 k
Transaction Summary
=========================================================================================================================================================================
Install 2 Packages
Total download size: 191 k
Installed size: 402 k
Is this ok [y/N]: y
Downloading Packages:
(1/2): gmp-c++-6.1.2-10.fc30.x86_64.rpm 36 kB/s | 17 kB 00:00
(2/2): gmp-devel-6.1.2-10.fc30.x86_64.rpm 214 kB/s | 173 kB 00:00
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Total 107 kB/s | 191 kB 00:01
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : gmp-c++-1:6.1.2-10.fc30.x86_64 1/2
Installing : gmp-devel-1:6.1.2-10.fc30.x86_64 2/2
Running scriptlet: gmp-devel-1:6.1.2-10.fc30.x86_64 2/2
Verifying : gmp-c++-1:6.1.2-10.fc30.x86_64 1/2
Verifying : gmp-devel-1:6.1.2-10.fc30.x86_64 2/2
Installed:
gmp-devel-1:6.1.2-10.fc30.x86_64 gmp-c++-1:6.1.2-10.fc30.x86_64
Complete!
哎呀，還不夠。
> install.packages("Rmpfr")
Installing package into ‘/home/romunov/R/x86_64-redhat-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
also installing the dependency ‘gmp’
trying URL 'https://cran.wu.ac.at/src/contrib/gmp_0.5-13.5.tar.gz'
Content type 'application/x-gzip' length 133364 bytes (130 KB)
==================================================
downloaded 130 KB
trying URL 'https://cran.wu.ac.at/src/contrib/Rmpfr_0.7-2.tar.gz'
Content type 'application/x-gzip' length 626031 bytes (611 KB)
==================================================
downloaded 611 KB
* installing *source* package ‘gmp’ ...
** package ‘gmp’ successfully unpacked and MD5 sums checked
** using staged installation
creating cache ./config.cache
checking for __gmpz_ui_sub in -lgmp... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I/usr/local/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c apply.cc -o apply.o
...
checking mpfr.h presence... no
checking for mpfr.h... no
configure: error: Header file mpfr.h not found; maybe use --with-mpfr-include=INCLUDE_PATH
ERROR: configuration failed for package ‘Rmpfr’
* removing ‘/home/romunov/R/x86_64-redhat-linux-gnu-library/3.6/Rmpfr’
The downloaded source packages are in
‘/tmp/Rtmpaz2MNH/downloaded_packages’
Warning message:
In install.packages("Rmpfr") :
installation of package ‘Rmpfr’ had non-zero exit status
安裝mpfr-devel 。
$ sudo dnf install mpfr-devel
Fedora Modular 30 - x86_64 21 kB/s | 23 kB 00:01
Fedora Modular 30 - x86_64 - Updates 32 kB/s | 22 kB 00:00
Fedora 30 - x86_64 - Updates 28 kB/s | 22 kB 00:00
Fedora 30 - x86_64 18 kB/s | 23 kB 00:01
google-chrome-beta 16 kB/s | 1.3 kB 00:00
google-chrome 3.4 kB/s | 1.3 kB 00:00
RPM Fusion for Fedora 30 - Free - Updates 61 kB/s | 10 kB 00:00
RPM Fusion for Fedora 30 - Free 12 kB/s | 10 kB 00:00
RPM Fusion for Fedora 30 - Nonfree - Steam 54 kB/s | 9.6 kB 00:00
RPM Fusion for Fedora 30 - Nonfree - Updates 51 kB/s | 10 kB 00:00
RPM Fusion for Fedora 30 - Nonfree 61 kB/s | 11 kB 00:00
Dependencies resolved.
=========================================================================================================================================================================
Package Architecture Version Repository Size
=========================================================================================================================================================================
Installing:
mpfr-devel x86_64 3.1.6-4.fc30 fedora 76 k
Transaction Summary
=========================================================================================================================================================================
Install 1 Package
Total download size: 76 k
Installed size: 122 k
Is this ok [y/N]: y
Downloading Packages:
mpfr-devel-3.1.6-4.fc30.x86_64.rpm 283 kB/s | 76 kB 00:00
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Total 66 kB/s | 76 kB 00:01
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : mpfr-devel-3.1.6-4.fc30.x86_64 1/1
Running scriptlet: mpfr-devel-3.1.6-4.fc30.x86_64 1/1
Verifying : mpfr-devel-3.1.6-4.fc30.x86_64 1/1
Installed:
mpfr-devel-3.1.6-4.fc30.x86_64
Complete!
再試一次
> install.packages("Rmpfr")
Installing package into ‘/home/romunov/R/x86_64-redhat-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
trying URL 'https://cran.wu.ac.at/src/contrib/Rmpfr_0.7-2.tar.gz'
Content type 'application/x-gzip' length 626031 bytes (611 KB)
==================================================
downloaded 611 KB
* installing *source* package ‘Rmpfr’ ...
** package ‘Rmpfr’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc -m64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -m64 accepts -g... yes
...
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rmpfr)
The downloaded source packages are in
‘/tmp/Rtmp4K9VTv/downloaded_packages’
解決方案2
0 2022-01-14 18:03:55
Ubuntu 解決方案的更新：
sudo apt install libgmp-dev
sudo apt-get install libmpfr-dev
之后，您可以在 R 中運行：
install.packages('gmp')
install.packages('Rmpfr')
R中安裝agricolae軟件包的問題（軟件包的安裝具有非零退出狀態）
[英]problem with installation of agricolae package (installation of package had non-zero exit status) in R
在 Ubuntu 上安裝包“devtools”的退出狀態為非零
[英]installation of package ‘devtools’ had non-zero exit status on Ubuntu
聲明:本站的技術帖子網頁，遵循CC BY-SA 4.0協議，如果您需要轉載，請注明本站網址或者原文地址。任何問題請咨詢:yoyou2525@163.com.