我需要在此 python 代碼中進行哪些更改才能將 DNA 序列轉換為蛋白質？

Question

我必須首先找到密碼子“ATG”，然后一旦找到它應該使用字典翻譯的密碼子。 我目前沒有 output。 我在 python 方面仍然缺乏經驗，因此無法使用正確的語法編寫代碼

def translate(line, table):
    protein = ""
    for i in range (0, len(line), 3):
        codon = line[i:i+3]
        protein += table[codon]
        print(protein)
    return protein

def find_start(sequence):
    for line in sequence:
        if line == "ATG":
            translate(line)
            return 

table = { 
        'ATA':'I', 'ATC':'I', 'ATT':'I', 'ATG':'M', 
        'ACA':'T', 'ACC':'T', 'ACG':'T', 'ACT':'T', 
        'AAC':'N', 'AAT':'N', 'AAA':'K', 'AAG':'K', 
        'AGC':'S', 'AGT':'S', 'AGA':'R', 'AGG':'R',                  
        'CTA':'L', 'CTC':'L', 'CTG':'L', 'CTT':'L', 
        'CCA':'P', 'CCC':'P', 'CCG':'P', 'CCT':'P', 
        'CAC':'H', 'CAT':'H', 'CAA':'Q', 'CAG':'Q', 
        'CGA':'R', 'CGC':'R', 'CGG':'R', 'CGT':'R', 
        'GTA':'V', 'GTC':'V', 'GTG':'V', 'GTT':'V', 
        'GCA':'A', 'GCC':'A', 'GCG':'A', 'GCT':'A', 
        'GAC':'D', 'GAT':'D', 'GAA':'E', 'GAG':'E', 
        'GGA':'G', 'GGC':'G', 'GGG':'G', 'GGT':'G', 
        'TCA':'S', 'TCC':'S', 'TCG':'S', 'TCT':'S', 
        'TTC':'F', 'TTT':'F', 'TTA':'L', 'TTG':'L', 
        'TAC':'Y', 'TAT':'Y', 'TAA':'_', 'TAG':'_', 
        'TGC':'C', 'TGT':'C', 'TGA':'_', 'TGG':'W', 
    } 


sequence = "ggatcatagtcttgttgcattgtaggtgtttctttacagtatccttcttaatgaatcatgattatgttctaagtagaccagatcgattcttacgactacaatattttcttttgagccatcatagattttttttagtttcaaaccagccttgcattgtgttctcctcgatgatgtgttacggattctaggattactagctaacctttctgtatttctaccctccattgaacaatttaac"

sequence = sequence.upper()


find_start(sequence)

Answer 1

將您的查找開始 function 更新為

def find_start(sequence):
    # index = sequence.find('ATG')    # if yow want start index of codon
    if ('ATG' in sequence):
        # do some thing

Answer 2

我仍然不是 100% 你想要達到的目標，但希望它有所幫助

for i in range(sequence.find("ATG"), len(sequence) - 2):
    possible_codon = sequence[i:i + 3]
    if possible_codon not in table:
        continue
    print(f"key: {possible_codon}, val: {table[possible_codon]}")