在以前工作的配置中忽略 Postgres 數據庫的 /docker-entrypoint-initdb.d 錯誤

Question

幾天來我一直在與這個問題作斗爭，我很難過。 這可能是我忽略的一些簡單的事情。

我有一個使用 docker-compose 編寫的 docker-project。 文件在這里docker-compose.yml

version: '3'

services:
  vdb:
    build:
      context: .
      dockerfile: vdb_docker.df
    ports:
      - "33060:3306"
    expose:
      - "33060"
  vvta:
    build:
      context: .
      dockerfile: vvta_docker.df
    ports:
      - "54320:5432"
    expose:
      - "54320"
  seqrepo:
    build:
      context: .
      dockerfile: vvsr_docker.df
    volumes:
      - seqdata:/usr/local/share/seqrepo
  vv:
    build: .
    depends_on:
      - vdb
      - vvta
    volumes:
      - seqdata:/usr/local/share/seqrepo
      - share:/usr/local/share

volumes:
  share:
    driver: local
    driver_opts:
      type: 'none'
      o: 'bind'
      device: '${HOME}/variantvalidator_data/share'
  seqdata:
    driver: local
    driver_opts:
      type: 'none'
      o: 'bind'
      device: '${HOME}/variantvalidator_data/share/seqrepo'

構建過程會導入多個dockerfiles，但相關的是vvta_docker.df

FROM postgres:latest

ENV POSTGRES_DB=vvta

ENV POSTGRES_USER=vvta_admin

ENV POSTGRES_PASSWORD=vvta_admin

RUN apt-get update && apt-get install -y wget && rm -rf /var/lib/apt/lists/*

RUN wget https://www528.lamp.le.ac.uk/vvdata/vvta/VVTA_2021_2_noseq.psql.gz -O /docker-entrypoint-initdb.d/VVTA_2021_2_noseq.psql.gz

此配置適用於先前構建的數據庫。 請注意，如果需要，數據庫地址包含在 vvta_docker.df 文件中。 構建過程（草案中）記錄在DOCKER.md 中，我總是在構建測試版本時“修剪”所有容器。

- Pull images

```bash
$ docker-compose pull

• 創建一個目錄，用於在您的計算機和容器之間共享資源

$ mkdir ~/variantvalidator_data
$ mkdir ~/variantvalidator_data/share

即在您的主目錄中名為 share 的目錄

• 建造

$ docker-compose build --no-cache

• 完成構建
  • 第一次執行此操作時，它將完成構建過程，例如，填充所需的數據庫
  • 完成后，您需要關閉服務並重新啟動（見下文）

$ docker-compose up

• 當你想停止容器時關閉服務

ctrl + c

但是，我不斷收到錯誤/usr/local/bin/docker-entrypoint.sh: ignoring /docker-entrypoint-initdb.d/VVTA_2021_2_noseq.psql.gz 。 我將在下面附上完整的（相關）跟蹤

我希望可以使用鏈接。 這對我來說更容易理解，希望對你們所有人更容易。

事情我已經嘗試過增加泊塢窗分區空間，內存和核心的可選配置，例如這一次，我發現對堆棧溢出比較類似的項目，但不太清楚他們是如何相關的

Docker 構建跟蹤

vvta_1     | ok
vvta_1     | syncing data to disk ... ok
vvta_1     | 
vvta_1     | 
vvta_1     | Success. You can now start the database server using:
vvta_1     | 
vvta_1     |     pg_ctl -D /var/lib/postgresql/data -l logfile start
vvta_1     | 
vvta_1     | initdb: warning: enabling "trust" authentication for local connections
vvta_1     | You can change this by editing pg_hba.conf or using the option -A, or
vvta_1     | --auth-local and --auth-host, the next time you run initdb.
vvta_1     | waiting for server to start....2021-07-23 13:09:52.135 UTC [47] LOG:  starting PostgreSQL 12.6 (Debian 12.6-1.pgdg100+1) on x86_64-pc-linux-gnu, compiled by gcc (Debian 8.3.0-6) 8.3.0, 64-bit
vvta_1     | 2021-07-23 13:09:52.137 UTC [47] LOG:  listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
vvta_1     | 2021-07-23 13:09:52.193 UTC [48] LOG:  database system was shut down at 2021-07-23 13:09:51 UTC
vvta_1     | 2021-07-23 13:09:52.205 UTC [47] LOG:  database system is ready to accept connections
vvta_1     |  done
vvta_1     | server started
vvta_1     | CREATE DATABASE
vvta_1     | 
vvta_1     | 
vvta_1     | /usr/local/bin/docker-entrypoint.sh: ignoring /docker-entrypoint-initdb.d/VVTA_2021_2_noseq.psql.gz
vvta_1     | 
vvta_1     | waiting for server to shut down...2021-07-23 13:09:52.603 UTC [47] LOG:  received fast shutdown request
vvta_1     | .2021-07-23 13:09:52.604 UTC [47] LOG:  aborting any active transactions
vvta_1     | 2021-07-23 13:09:52.614 UTC [47] LOG:  background worker "logical replication launcher" (PID 54) exited with exit code 1
vvta_1     | 2021-07-23 13:09:52.615 UTC [49] LOG:  shutting down
vvta_1     | 2021-07-23 13:09:52.648 UTC [47] LOG:  database system is shut down
vvta_1     |  done
vvta_1     | server stopped
vvta_1     | 
vvta_1     | PostgreSQL init process complete; ready for start up.
vvta_1     | 
vvta_1     | 2021-07-23 13:09:52.722 UTC [1] LOG:  starting PostgreSQL 12.6 (Debian 12.6-1.pgdg100+1) on x86_64-pc-linux-gnu, compiled by gcc (Debian 8.3.0-6) 8.3.0, 64-bit
vvta_1     | 2021-07-23 13:09:52.730 UTC [1] LOG:  listening on IPv4 address "0.0.0.0", port 5432
vvta_1     | 2021-07-23 13:09:52.730 UTC [1] LOG:  listening on IPv6 address "::", port 5432
vvta_1     | 2021-07-23 13:09:52.735 UTC [1] LOG:  listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
vvta_1     | 2021-07-23 13:09:52.758 UTC [75] LOG:  database system was shut down at 2021-07-23 13:09:52 UTC
vvta_1     | 2021-07-23 13:09:52.768 UTC [1] LOG:  database system is ready to accept connections

Answer 1

Docker Hub postgres鏡像頁面注釋：

如果您想在從該映像派生的映像中進行額外的初始化，請在/docker-entrypoint-initdb.d ... 下添加一個或多個*.sql 、 *.sql.gz或*.sh腳本。

您擁有的文件與這三種模式之一不匹配，但其文件名以.psql.gz 。 下載時需要重命名：

RUN wget https://www528.lamp.le.ac.uk/vvdata/vvta/VVTA_2021_2_noseq.psql.gz \
  -O /docker-entrypoint-initdb.d/VVTA_2021_2_noseq.sql.gz
# change this filename to remove "p" here ........ ^^^