在 Ubuntu 22.04 上安裝 package 測試 R 時出現問題

Question

我正在嘗試在 R 中安裝“devtools”。 我不能這樣做，因為它提示我“testthat”的問題。 然后我嘗試安裝它，我得到了：

> install.packages("testthat")
Installing package into ‘/home/alejo/R/x86_64-pc-linux-gnu-library/4.0’
(as ‘lib’ is unspecified)
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  243k  100  243k    0     0   192k      0  0:00:01  0:00:01 --:--:--  192k
Microsoft R Open 4.0.2
The enhanced R distribution from Microsoft
Microsoft packages Copyright (C) 2020 Microsoft Corporation

Using the Intel MKL for parallel mathematical computing (using 6 cores).

Default CRAN mirror snapshot taken on 2020-07-16.
See: https://mran.microsoft.com/.

* installing *source* package ‘testthat’ ...
** package ‘testthat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I/opt/microsoft/ropen/4.0.2/lib64/R/include -DNDEBUG -I../inst/include     -DCOMPILING_TESTTHAT  -DU_STATIC_IMPLEMENTATION   -fpic  -DU_STATIC_IMPLEMENTATION -O2 -g  -c init.c -o init.o
gcc -std=gnu99 -I/opt/microsoft/ropen/4.0.2/lib64/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -DU_STATIC_IMPLEMENTATION   -fpic  -DU_STATIC_IMPLEMENTATION -O2 -g  -c reassign.c -o reassign.o
g++  -I/opt/microsoft/ropen/4.0.2/lib64/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -DU_STATIC_IMPLEMENTATION   -fpic  -DU_STATIC_IMPLEMENTATION -O2 -g  -c test-catch.cpp -o test-catch.o
g++  -I/opt/microsoft/ropen/4.0.2/lib64/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -DU_STATIC_IMPLEMENTATION   -fpic  -DU_STATIC_IMPLEMENTATION -O2 -g  -c test-example.cpp -o test-example.o
g++  -I/opt/microsoft/ropen/4.0.2/lib64/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -DU_STATIC_IMPLEMENTATION   -fpic  -DU_STATIC_IMPLEMENTATION -O2 -g  -c test-runner.cpp -o test-runner.o
In file included from /usr/include/signal.h:328,
                 from ../inst/include/testthat/vendor/catch.h:6467,
                 from ../inst/include/testthat/testthat.h:65,
                 from ../inst/include/testthat.h:1,
                 from test-runner.cpp:7:
../inst/include/testthat/vendor/catch.h:6490:33: error: size of array ‘altStackMem’ is not an integral constant-expression
 6490 |         static char altStackMem[SIGSTKSZ];
      |                                 ^~~~~~~~
../inst/include/testthat/vendor/catch.h:6541:45: error: size of array ‘altStackMem’ is not an integral constant-expression
 6541 |     char FatalConditionHandler::altStackMem[SIGSTKSZ] = {};
      |                                             ^~~~~~~~
make: *** [/opt/microsoft/ropen/4.0.2/lib64/R/etc/Makeconf:168: test-runner.o] Error 1
ERROR: compilation failed for package ‘testthat’
* removing ‘/home/alejo/R/x86_64-pc-linux-gnu-library/4.0/testthat’
Warning in install.packages :
  installation of package ‘testthat’ had non-zero exit status

我嘗試了其他方法：

• https://anaconda.org/r/r-testthat
• https://github.com/r-lib/testthat/issues/450 （我沒有使用github的開發工具）
• https://testthat.r-lib.org/ （同上）

我對 linux 和 r 不熟練，有人可以幫我嗎？

Answer 1

如果您使用的是 Microsoft-R，我所做的是為 Cran 卸載並安裝 R。 然后，我可以安裝“devtools”。 我對這個問題的理解是，r 和 microsoft-R 的版本已更新，因此您無法安裝“testthat”的最新版本（需要在 devtools 中安裝）。