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在MySQL服务器中安装Bioperl库

[英]Bioperl library installation in mysql server

原文 2014-05-06 14:59:41 5 1 perl/ cgi/ bioperl

I installed Bioperl and works correctly. 我安装了Bioperl并正常工作。 then installed Bio::Tools::Run::Phylo::Phyml and it works good from terminal. 然后安装Bio :: Tools :: Run :: Phylo :: Phyml，并且在终端上运行良好。

But when I call same script contains it from a browser to using CGI method, I get this error: 但是，当我从浏览器到使用CGI方法调用相同的脚本时，出现此错误：

Can't locate Bio/Tools/Run/Phylo/Phyml.pm in @INC (@INC contains: /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl . /etc/apache2) at /var/www/Adol/mafToPhyML1.pl line 14.\\nBEGIN failed--compilation aborted at /var/www/Adol/mafToPhyML1.pl line 14. 无法在@INC中找到Bio / Tools / Run / Phylo / Phyml.pm（@INC包含：/ etc / perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14。 2 / usr / lib / perl5 / usr / share / perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 / usr / local / lib / site_perl。/ etc / apache2）在/ var / www / Adol /mafToPhyML1.pl第14行。\\ nBEGIN失败-在/var/www/Adol/mafToPhyML1.pl第14行中中止了编译。

I got this message from error.log 我从error.log收到此消息

1 个解决方案

This post is similar to your question. 这篇文章与您的问题类似。 You need to properly set @INC in your cgi script. 您需要在cgi脚本中正确设置@INC 。 Add a use lib pragma to your cgi script with the directory that contains the Bio directory of where your Phyml.pm is located. use lib包含Phyml.pm所在的Bio目录的目录将use lib pragma添加到您的cgi脚本中。