java.lang.OutOfMemoryError：在Web服务中加载RDF文件时，超出了GC开销限制

Question

I have a question: 我有个问题：

I'm loading a RDF file (.nt format) in my model using Web Service. 我正在使用Web Service在模型中加载RDF文件（.nt格式）。 I have this method: 我有这种方法：

    @WebMethod(operationName = "operation")
    public String operation(@WebParam(name = "f") String f, @WebParam(name = "label") String label) {
        return loadModel(f, label);
    }

    private String loadModel(String f, String label){
            Model model = ModelFactory.createDefaultModel();
            InputStream in = FileManager.get().open( f );

            // read the RDF/XML file
            model.read(in, "RDF/XML");

            Model modellabel = loadModel2(label);

            ResIterator sublist = modellabel.listSubjects();
            Resource sub = null;
            while (sublist.hasNext()){
                sub = sublist.next();
                break;
            }

            return sub.toString();
        }

    public Model loadModel2 (String label) {

            Model model;
            model = RDFDataMgr.loadModel(label);

            return model;
        }

When I run this code with "Test Web Service" (and I insert the Strings), I get this error on GlassFish Server 4: 当我使用“测试Web服务”运行此代码（并插入字符串）时，在GlassFish Server 4上出现此错误：

Grave:   log4j:WARN No appenders could be found for logger (org.apache.jena.riot.stream.JenaIOEnvironment).
Grave:   log4j:WARN Please initialize the log4j system properly.
Grave:   log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Grave:   javax.ejb.EJBException
    at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:748)
    at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:698)
    at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:503)
    at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4475)
    at com.sun.ejb.containers.WebServiceInvocationHandler.invoke(WebServiceInvocationHandler.java:205)
    at com.sun.proxy.$Proxy296.operation(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at org.glassfish.webservices.InvokerImpl.invoke(InvokerImpl.java:82)
    at org.glassfish.webservices.EjbInvokerImpl.invoke(EjbInvokerImpl.java:82)
    at com.sun.xml.ws.server.InvokerTube$2.invoke(InvokerTube.java:149)
    at com.sun.xml.ws.server.sei.SEIInvokerTube.processRequest(SEIInvokerTube.java:88)
    at com.sun.xml.ws.api.pipe.Fiber.__doRun(Fiber.java:1136)
    at com.sun.xml.ws.api.pipe.Fiber._doRun(Fiber.java:1050)
    at com.sun.xml.ws.api.pipe.Fiber.doRun(Fiber.java:1019)
    at com.sun.xml.ws.api.pipe.Fiber.runSync(Fiber.java:877)
    at com.sun.xml.ws.api.pipe.helper.AbstractTubeImpl.process(AbstractTubeImpl.java:136)
    at org.glassfish.webservices.MonitoringPipe.process(MonitoringPipe.java:142)
    at com.sun.xml.ws.api.pipe.helper.PipeAdapter.processRequest(PipeAdapter.java:119)
    at com.sun.xml.ws.api.pipe.Fiber.__doRun(Fiber.java:1136)
    at com.sun.xml.ws.api.pipe.Fiber._doRun(Fiber.java:1050)
    at com.sun.xml.ws.api.pipe.Fiber.doRun(Fiber.java:1019)
    at com.sun.xml.ws.api.pipe.Fiber.runSync(Fiber.java:877)
    at com.sun.xml.ws.api.pipe.helper.AbstractTubeImpl.process(AbstractTubeImpl.java:136)
    at com.sun.enterprise.security.webservices.CommonServerSecurityPipe.processRequest(CommonServerSecurityPipe.java:210)
    at com.sun.enterprise.security.webservices.CommonServerSecurityPipe.process(CommonServerSecurityPipe.java:142)
    at com.sun.xml.ws.api.pipe.helper.PipeAdapter.processRequest(PipeAdapter.java:119)
    at com.sun.xml.ws.api.pipe.Fiber.__doRun(Fiber.java:1136)
    at com.sun.xml.ws.api.pipe.Fiber._doRun(Fiber.java:1050)
    at com.sun.xml.ws.api.pipe.Fiber.doRun(Fiber.java:1019)
    at com.sun.xml.ws.api.pipe.Fiber.runSync(Fiber.java:877)
    at com.sun.xml.ws.server.WSEndpointImpl$2.process(WSEndpointImpl.java:420)
    at com.sun.xml.ws.transport.http.HttpAdapter$HttpToolkit.handle(HttpAdapter.java:687)
    at com.sun.xml.ws.transport.http.HttpAdapter.handle(HttpAdapter.java:266)
    at com.sun.xml.ws.transport.http.servlet.ServletAdapter.handle(ServletAdapter.java:169)
    at org.glassfish.webservices.Ejb3MessageDispatcher.handlePost(Ejb3MessageDispatcher.java:110)
    at org.glassfish.webservices.Ejb3MessageDispatcher.invoke(Ejb3MessageDispatcher.java:80)
    at org.glassfish.webservices.EjbWebServiceServlet.dispatchToEjbEndpoint(EjbWebServiceServlet.java:203)
    at org.glassfish.webservices.EjbWebServiceServlet.service(EjbWebServiceServlet.java:146)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
    at org.glassfish.grizzly.servlet.ServletHandler.doServletService(ServletHandler.java:242)
    at org.glassfish.grizzly.servlet.ServletHandler.service(ServletHandler.java:193)
    at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:246)
    at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191)
    at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168)
    at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189)
    at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)
    at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
    at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838)
    at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135)
    at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564)
    at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544)
    at java.lang.Thread.run(Thread.java:744)
Caused by: java.lang.OutOfMemoryError: GC overhead limit exceeded
    at java.util.Arrays.copyOfRange(Arrays.java:2694)
    at java.lang.String.<init>(String.java:203)
    at java.lang.StringBuilder.toString(StringBuilder.java:405)
    at org.apache.jena.riot.tokens.TokenizerText.langTag(TokenizerText.java:981)
    at org.apache.jena.riot.tokens.TokenizerText.parseToken(TokenizerText.java:221)
    at org.apache.jena.riot.tokens.TokenizerText.hasNext(TokenizerText.java:86)
    at org.apache.jena.atlas.iterator.PeekIterator.fill(PeekIterator.java:50)
    at org.apache.jena.atlas.iterator.PeekIterator.next(PeekIterator.java:92)
    at org.apache.jena.riot.lang.LangEngine.nextToken(LangEngine.java:99)
    at org.apache.jena.riot.lang.LangNTriples.parseOne(LangNTriples.java:67)
    at org.apache.jena.riot.lang.LangNTriples.runParser(LangNTriples.java:54)
    at org.apache.jena.riot.lang.LangBase.parse(LangBase.java:42)
    at org.apache.jena.riot.RDFParserRegistry$ReaderRIOTFactoryImpl$1.read(RDFParserRegistry.java:142)
    at org.apache.jena.riot.RDFDataMgr.process(RDFDataMgr.java:859)
    at org.apache.jena.riot.RDFDataMgr.parse(RDFDataMgr.java:687)
    at org.apache.jena.riot.RDFDataMgr.read(RDFDataMgr.java:208)
    at org.apache.jena.riot.RDFDataMgr.read(RDFDataMgr.java:101)
    at org.apache.jena.riot.RDFDataMgr.read(RDFDataMgr.java:92)
    at org.apache.jena.riot.RDFDataMgr.loadModel(RDFDataMgr.java:328)
    at prova.Prova_WS.loadModel(Prova_WS.java:98)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
    at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
    at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4695)
    at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:630)
    at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
    at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:582)

Avvertenza:   EJB5184:A system exception occurred during an invocation on EJB Prova_WS, method: public java.lang.String prova.Prova_WS.operation(java.lang.String,java.lang.String)
Avvertenza:   javax.ejb.EJBException
    at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:748)
    at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:698)
    at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:503)
    at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4475)
    at com.sun.ejb.containers.WebServiceInvocationHandler.invoke(WebServiceInvocationHandler.java:205)
    at com.sun.proxy.$Proxy296.operation(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at org.glassfish.webservices.InvokerImpl.invoke(InvokerImpl.java:82)
    at org.glassfish.webservices.EjbInvokerImpl.invoke(EjbInvokerImpl.java:82)
    at com.sun.xml.ws.server.InvokerTube$2.invoke(InvokerTube.java:149)
    at com.sun.xml.ws.server.sei.SEIInvokerTube.processRequest(SEIInvokerTube.java:88)
    at com.sun.xml.ws.api.pipe.Fiber.__doRun(Fiber.java:1136)
    at com.sun.xml.ws.api.pipe.Fiber._doRun(Fiber.java:1050)
    at com.sun.xml.ws.api.pipe.Fiber.doRun(Fiber.java:1019)
    at com.sun.xml.ws.api.pipe.Fiber.runSync(Fiber.java:877)
    at com.sun.xml.ws.api.pipe.helper.AbstractTubeImpl.process(AbstractTubeImpl.java:136)
    at org.glassfish.webservices.MonitoringPipe.process(MonitoringPipe.java:142)
    at com.sun.xml.ws.api.pipe.helper.PipeAdapter.processRequest(PipeAdapter.java:119)
    at com.sun.xml.ws.api.pipe.Fiber.__doRun(Fiber.java:1136)
    at com.sun.xml.ws.api.pipe.Fiber._doRun(Fiber.java:1050)
    at com.sun.xml.ws.api.pipe.Fiber.doRun(Fiber.java:1019)
    at com.sun.xml.ws.api.pipe.Fiber.runSync(Fiber.java:877)
    at com.sun.xml.ws.api.pipe.helper.AbstractTubeImpl.process(AbstractTubeImpl.java:136)
    at com.sun.enterprise.security.webservices.CommonServerSecurityPipe.processRequest(CommonServerSecurityPipe.java:210)
    at com.sun.enterprise.security.webservices.CommonServerSecurityPipe.process(CommonServerSecurityPipe.java:142)
    at com.sun.xml.ws.api.pipe.helper.PipeAdapter.processRequest(PipeAdapter.java:119)
    at com.sun.xml.ws.api.pipe.Fiber.__doRun(Fiber.java:1136)
    at com.sun.xml.ws.api.pipe.Fiber._doRun(Fiber.java:1050)
    at com.sun.xml.ws.api.pipe.Fiber.doRun(Fiber.java:1019)
    at com.sun.xml.ws.api.pipe.Fiber.runSync(Fiber.java:877)
    at com.sun.xml.ws.server.WSEndpointImpl$2.process(WSEndpointImpl.java:420)
    at com.sun.xml.ws.transport.http.HttpAdapter$HttpToolkit.handle(HttpAdapter.java:687)
    at com.sun.xml.ws.transport.http.HttpAdapter.handle(HttpAdapter.java:266)
    at com.sun.xml.ws.transport.http.servlet.ServletAdapter.handle(ServletAdapter.java:169)
    at org.glassfish.webservices.Ejb3MessageDispatcher.handlePost(Ejb3MessageDispatcher.java:110)
    at org.glassfish.webservices.Ejb3MessageDispatcher.invoke(Ejb3MessageDispatcher.java:80)
    at org.glassfish.webservices.EjbWebServiceServlet.dispatchToEjbEndpoint(EjbWebServiceServlet.java:203)
    at org.glassfish.webservices.EjbWebServiceServlet.service(EjbWebServiceServlet.java:146)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
    at org.glassfish.grizzly.servlet.ServletHandler.doServletService(ServletHandler.java:242)
    at org.glassfish.grizzly.servlet.ServletHandler.service(ServletHandler.java:193)
    at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:246)
    at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191)
    at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168)
    at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189)
    at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)
    at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
    at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838)
    at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135)
    at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564)
    at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544)
    at java.lang.Thread.run(Thread.java:744)
Caused by: java.lang.OutOfMemoryError: GC overhead limit exceeded
    at java.util.Arrays.copyOfRange(Arrays.java:2694)
    at java.lang.String.<init>(String.java:203)
    at java.lang.StringBuilder.toString(StringBuilder.java:405)
    at org.apache.jena.riot.tokens.TokenizerText.langTag(TokenizerText.java:981)
    at org.apache.jena.riot.tokens.TokenizerText.parseToken(TokenizerText.java:221)
    at org.apache.jena.riot.tokens.TokenizerText.hasNext(TokenizerText.java:86)
    at org.apache.jena.atlas.iterator.PeekIterator.fill(PeekIterator.java:50)
    at org.apache.jena.atlas.iterator.PeekIterator.next(PeekIterator.java:92)
    at org.apache.jena.riot.lang.LangEngine.nextToken(LangEngine.java:99)
    at org.apache.jena.riot.lang.LangNTriples.parseOne(LangNTriples.java:67)
    at org.apache.jena.riot.lang.LangNTriples.runParser(LangNTriples.java:54)
    at org.apache.jena.riot.lang.LangBase.parse(LangBase.java:42)
    at org.apache.jena.riot.RDFParserRegistry$ReaderRIOTFactoryImpl$1.read(RDFParserRegistry.java:142)
    at org.apache.jena.riot.RDFDataMgr.process(RDFDataMgr.java:859)
    at org.apache.jena.riot.RDFDataMgr.parse(RDFDataMgr.java:687)
    at org.apache.jena.riot.RDFDataMgr.read(RDFDataMgr.java:208)
    at org.apache.jena.riot.RDFDataMgr.read(RDFDataMgr.java:101)
    at org.apache.jena.riot.RDFDataMgr.read(RDFDataMgr.java:92)
    at org.apache.jena.riot.RDFDataMgr.loadModel(RDFDataMgr.java:328)
    at prova.Prova_WS.loadModel(Prova_WS.java:98)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
    at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
    at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4695)
    at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:630)
    at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
    at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:582)

I have noted that this error is given on: 我已经注意到此错误是基于：

Model modellabel = loadModel2(label); 型号modellabel = loadModel2（label）;

I have read some post on StackOverflow to increase java heap memory as How to increase the java heap size in netbeans? 我已经阅读了一些关于StackOverflow的文章，以增加Java堆内存，如何增加NetBeans中的Java堆大小？ , but, I get the same error, also if I increase 8192Mb. ，但是，如果我增加8192Mb，也会出现相同的错误。

The file that I pass in input, is big, but in java application environment I don't get this error. 我输入的文件很大，但是在Java应用程序环境中我没有收到此错误。 Why? 为什么？

Answer 1

If you get the error on computer A but not on B, then there must be a difference. 如果您在计算机A上收到错误，但在计算机B上没有收到，则一定有区别。 You'll have to compare every little detail: 您必须比较每个小细节：

Java VM type and versions Java VM类型和版本
OS version 作业系统版本
free memory on both 两者都有可用内存
options that you use to start 您用来开始的选项
do you really have the same versions of everything (code, JARS)? 您真的拥有所有版本（代码，JARS）的相同版本吗？
Are you loading the exact same data on both systems? 您是否在两个系统上都加载了完全相同的数据？

Eventually, you'll stuble over something that is different and which explains the odd behavior. 最终，您将对一些不同的东西进行处理，这可以解释奇怪的行为。

Answer 2

I have resolved my problem in this way: I have changed the loadModel2 method: 我已经通过以下方式解决了我的问题：我更改了loadModel2方法：

public Model loadModel2 (String label) {

                String directory;
                directory = "C:\\tdb";
                Model model = TDBFactory.createModel(directory); 

        return model;
    }

In this way, I don't get the overhead error. 这样，我不会得到开销错误。

Answer 3

You can try by giving more memory to the process, just add one parameter in your startup scripts: 您可以通过为进程分配更多的内存来尝试，只需在启动脚本中添加一个参数即可：

java -Xmx1024m< com.yourcompany.YourClass/code> java -Xmx1024m <com.yourcompany.YourClass / code>

You can also try out Plumbr for free. 您也可以免费试用Plumbr 。 When we find the cause for the java.lang.OutOfMemoryError you will see the exact location of the problem along with solution guidelines. 当我们找到导致java.lang.OutOfMemoryError的原因时，您将看到问题的确切位置以及解决方案准则。

java.lang.OutOfMemoryError：在Web服务中加载RDF文件时，超出了GC开销限制

问题描述

3 个解决方案

解决方案1
2 已采纳 2014-07-29 12:48:18

解决方案2
0 2014-07-30 07:54:23

解决方案3
0 2014-07-30 08:20:37

java.lang.OutOfMemoryError：在Web服务中加载RDF文件时，超出了GC开销限制

问题描述

3 个解决方案

解决方案1 2 已采纳 2014-07-29 12:48:18

解决方案2 0 2014-07-30 07:54:23

解决方案3 0 2014-07-30 08:20:37

解决方案1
2 已采纳 2014-07-29 12:48:18

解决方案2
0 2014-07-30 07:54:23

解决方案3
0 2014-07-30 08:20:37