Python无法使用multiprocessing.pool分配内存

Question

My code (part of a genetic optimization algorithm) runs a few processes in parallel, waits for all of them to finish, reads the output, and then repeats with a different input. Everything was working fine when I tested with 60 repetitions. Since it worked, I decided to use a more realistic number of repetitions, 200. I received this error:

File "/usr/lib/python2.7/threading.py", line 551, in __bootstrap_inner
 self.run()
File "/usr/lib/python2.7/threading.py", line 504, in run
 self.__target(*self.__args, **self.__kwargs)
File "/usr/lib/python2.7/multiprocessing/pool.py", line 302, in _handle_workers
 pool._maintain_pool()
File "/usr/lib/python2.7/multiprocessing/pool.py", line 206, in _maintain_pool
 self._repopulate_pool()
File "/usr/lib/python2.7/multiprocessing/pool.py", line 199, in _repopulate_pool
 w.start()
File "/usr/lib/python2.7/multiprocessing/process.py", line 130, in start
 self._popen = Popen(self)
File "/usr/lib/python2.7/multiprocessing/forking.py", line 120, in __init__
 self.pid = os.fork()
OSError: [Errno 12] Cannot allocate memory

Here is a snippet of my code that uses pool:

def RunMany(inputs):
from multiprocessing import cpu_count, Pool
proc=inputs[0]
pool=Pool(processes = proc) 
results=[]
for arg1 in inputs[1]:
    for arg2 in inputs[2]:
        for arg3 in inputs[3]:
            results.append(pool.apply_async(RunOne, args=(arg1, arg2, arg3)))
casenum=0
datadict=dict()
for p in results:
    #get results of simulation once it has finished
    datadict[casenum]=p.get() 
    casenum+=1
return datadict

The RunOne function creates an object in class I created, uses a computationally-heavy python package to solve a chemistry problem that takes about 30 seconds, and returns the object with the output of the chemistry solver.

So, my code calls RunMany in serial, and RunMany then calls RunOne in parallel. In my testing, I've called RunOne using 10 processors (the computer has 16) and a pool of 20 calls to RunOne. In other words, len(arg1)*len(arg2)*len(arg3)=20. Everything worked fine when my code called RunMany 60 times, but I ran out of memory when I called it 200 times.

Does this mean some process isn't correctly cleaning up after itself? Do I have a memory leak? How can I determine if I have a memory leak, and how do I find out the cause of the leak? The only item that is growing in my 200-repetition loop is a list of numbers that grows from 0 size to a length of 200. I have a dictionary of objects from a custom class I've built, but it is capped at a length of 50 entries - each time the loop executes, it deletes an item from the dictionary and replaces it with another item.

Edit: Here is a snippet of the code that calls RunMany

for run in range(nruns):
    #create inputs object for RunMany using genetic methods. 
    #Either use starting "population" or create "child" inputs from successful previous runs
    datadict = RunMany(inputs)

    sumsquare=0
    for i in range(len(datadictsenk)): #input condition
        sumsquare+=Compare(datadict[i],Target[i]) #compare result to target

    with open(os.path.join(mainpath,'Outputs','output.txt'),'a') as f:
        f.write('\t'.join([str(x) for x in [inputs.name, sumsquare]])+'\n')

    Objective.append(sumsquare) #add sum of squares to list, to be plotted outside of loop
    population[inputs]=sumsquare #add/update the model in the "population", using the inputs object as a key, and it's objective function as the value
    if len(population)>initialpopulation:
        population = PopulationReduction(population) #reduce the "population" by "killing" unfit "genes"
    avgtime=(datetime.datetime.now()-starttime2)//(run+1)
    remaining=(nruns-run-1)*avgtime
    print(' Finished '+str(run+1)+' / ' +str(nruns)+'. Elapsed: '+str(datetime.datetime.now().replace(microsecond=0)-starttime)+' Remaining: '+str(remaining)+' Finish at '+str((datetime.datetime.now()+remaining).replace(microsecond=0))+'~~~', end="\r")

Answer 1

As shown in the comments to my question, the answer came from Puciek.

The solution was to close the pool of processes after it is finished. I thought that it would be closed automatically because the results variable is local to RunMany , and would be deleted after RunMany completed. However, python doesn't always work as expected.

The fixed code is:

def RunMany(inputs):
from multiprocessing import cpu_count, Pool
proc=inputs[0]
pool=Pool(processes = proc) 
results=[]
for arg1 in inputs[1]:
    for arg2 in inputs[2]:
        for arg3 in inputs[3]:
            results.append(pool.apply_async(RunOne, args=(arg1, arg2, arg3)))
#new section
pool.close()
pool.join()    
#end new section
casenum=0
datadict=dict()
for p in results:
    #get results of simulation once it has finished
    datadict[casenum]=p.get() 
    casenum+=1
return datadict