[英]How to plot a combined bar and line plot in ggplot2
I have the following data which I am trying to plot as combined bar and line plot (with CI)我有以下数据,我正在尝试将 plot 作为组合条和线 plot(带 CI)
A data frame of Feature, Count, Odds Ratio and Confidence Interval values for OR OR 的特征、计数、优势比和置信区间值的数据框
I am trying to get a plot as A bar plot for count over lapped with a line plot for Odds Ratio with CI bars我正在尝试将 plot 作为 A 条 plot 用于计数与一条线 plot 与 CI 条的优势比重叠
I tried to plot in ggplot2 using following code:我尝试使用以下代码在 ggplot2 中的 plot :
ggplot(feat)+
geom_bar(aes(x=Feat, y=Count),stat="identity", fill = "steelblue") +
geom_line(aes(x=Feat, y=OR*max(feat$Count)),stat="identity", group = 1) +
geom_point(aes(x=Feat, y=OR*max(feat$Count))) +
geom_errorbar(aes(x=Feat, ymin=CI1, ymax=CI2), width=.1, colour="orange",
position = position_dodge(0.05))
However, I am not getting the CI bars for the line graph, as can be seen in pic: Rather, I am getting them for barplot但是,我没有得到折线图的 CI 条,如图所示:相反,我得到的是 barplot
Can someone can please help me out to sort this issue.有人可以帮我解决这个问题。
Thanks谢谢
Edit - Dput:编辑 - 输入:
df <- structure(list(Feat = structure(1:8, .Label = c("A", "B", "C",
"D", "E", "F", "G", "H"), class = "factor"), Count = structure(c(2L,
8L, 7L, 5L, 4L, 1L, 6L, 3L), .Label = c("13", "145", "2", "25",
"26", "3", "37", "43"), class = "factor"), OR = structure(c(4L,
2L, 1L, 5L, 3L, 7L, 6L, 8L), .Label = c("0.38", "1.24", "1.33",
"1.51", "1.91", "2.08", "2.27", "3.58"), class = "factor"), CI1 = structure(c(7L,
4L, 1L, 6L, 3L, 5L, 2L, 2L), .Label = c("0.26", "0.43", "0.85",
"0.89", "1.2", "1.24", "1.25"), class = "factor"), CI2 = structure(c(3L,
2L, 1L, 6L, 4L, 7L, 8L, 5L), .Label = c("0.53", "1.7", "1.82",
"1.98", "13.07", "2.83", "3.92", "6.13"), class = "factor")), class = "data.frame", row.names = c(NA,
-8L))
Is this what you had in mind?这是你的想法吗?
ratio <- max(feat$Count)/max(feat$CI2)
ggplot(feat) +
geom_bar(aes(x=Feat, y=Count),stat="identity", fill = "steelblue") +
geom_line(aes(x=Feat, y=OR*ratio),stat="identity", group = 1) +
geom_point(aes(x=Feat, y=OR*ratio)) +
geom_errorbar(aes(x=Feat, ymin=CI1*ratio, ymax=CI2*ratio), width=.1, colour="orange",
position = position_dodge(0.05)) +
scale_y_continuous("Count", sec.axis = sec_axis(~ . / ratio, name = "Odds Ratio"))
Edit: Just for fun with the legend too.编辑:也只是为了好玩。
ggplot(feat) +
geom_bar(aes(x=Feat, y=Count, fill = "Count"),stat="identity") + scale_fill_manual(values="steelblue") +
geom_line(aes(x=Feat, y=OR*ratio, color = "Odds Ratio"),stat="identity", group = 1) + scale_color_manual(values="orange") +
geom_point(aes(x=Feat, y=OR*ratio)) +
geom_errorbar(aes(x=Feat, ymin=CI1*ratio, ymax=CI2*ratio), width=.1, colour="orange",
position = position_dodge(0.05)) +
scale_y_continuous("Count", sec.axis = sec_axis(~ . / ratio, name = "Odds Ratio")) +
theme(legend.key=element_blank(), legend.title=element_blank(), legend.box="horizontal",legend.position = "bottom")
Since you asked about adding p values for comparisons in the comments, here is a way you can do that.由于您在评论中询问了添加 p 值以进行比较,因此您可以这样做。 Unfortunately, because you don't really want to add **all* the comparisons, there's a little bit of hard coding to do.
不幸的是,因为您真的不想添加 **all* 比较,所以需要进行一些硬编码。
library(ggplot2)
library(ggsignif)
ggplot(feat,aes(x=Feat, y=Count)) +
geom_bar(aes(fill = "Count"),stat="identity") + scale_fill_manual(values="steelblue") +
geom_line(aes(x=Feat, y=OR*ratio, color = "Odds Ratio"),stat="identity", group = 1) + scale_color_manual(values="orange") +
geom_point(aes(x=Feat, y=OR*ratio)) +
geom_errorbar(aes(x=Feat, ymin=CI1*ratio, ymax=CI2*ratio), width=.1, colour="orange",
position = position_dodge(0.05)) +
scale_y_continuous("Count", sec.axis = sec_axis(~ . / ratio, name = "Odds Ratio")) +
theme(legend.key=element_blank(), legend.title=element_blank(), legend.box="horizontal",legend.position = "bottom") +
geom_signif(comparisons = list(c("A","H"),c("B","F"),c("D","E")),
y_position = c(150,60,40),
annotation = c("***","***","n.s."))
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