I want to visualize how does the length of a sequence affect numbers of errors in different categories.
The problem actually starts from the file formatting, but having a file formatted as follows:
category count length
s 12 1500
i 13 1500
d 15 1500
s 17 1600
i 18 1600
d 22 1600
s 14 1500
i 15 1500
d 17 1500
s 30 1800
i 40 1800
d 0 1800
How can I plot this to have length column as x-axis, s,i,d as dots of different colours or shapes.
I'm not sure why you accepted the above answer because you've asked specificly for ggplot2. So I'm adding the ggplot solution just in case
library(ggplot2)
test <- data.frame(category = factor(c("s","i","d","s","i","d","s","i","d","s","i","d")),
count = c(12,13,15,17,18,22,14,15,17,30,40,0),
length = c(1500,1500,1500,1600,1600,1600,1500,1500,1500,1800,1800,1800))
ggplot(test, aes(x = length, y = count)) + geom_point(aes(colour = category))
Perhaps this works:
xx = read.table("/tmp/tmp.txt", sep=" ", header=TRUE)
yy = split(xx[c("count", "length")], xx[["category"]])
with(yy[["d"]],
plot(y=count, x=length,
xlim=c(min(xx[["length"]]), max(xx[["length"]])),
ylim=c(min(xx[["count"]]), max(xx[["count"]])),
col="red"))
with(yy[["i"]], points(y=count, x=length, col="blue"))
with(yy[["s"]], points(y=count, x=length, col="green"))
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