I have a dictionary with keys relating to various reactions and their data ie. exponentn, comment etc. I want to search and print a list of reactions concerning the atom 'BR'. My code currently prints all reactions for 'BR' and the data in random order. I am not sure which data corresponds to which reaction.
I've had a go at trying to use the repr function to output the data as follows but I'm not having much luck:
reactionName : exponentn comment
I found another question which I tried to replicate but was not able to do so; printing values and keys from a dictionary in a specific format (python) .
class SourceNotDefinedException(Exception):
def __init__(self, message):
super(SourceNotDefinedException, self).__init__(message)
class tvorechoObject(object):
"""The class stores a pair of objects, "tv" objects, and "echo" objects. They are accessed simply by doing .tv, or .echo. If it does not exist, it will fall back to the other variable. If neither are present, it returns None."""
def __init__(self, echo=None, tv=None):
self.tv = tv
self.echo = echo
def __repr__(self):
return str({"echo": self.echo, "tv": self.tv}) # Returns the respective strings
def __getattribute__(self, item):
"""Altered __getattribute__() function to return the alternative of .echo / .tv if the requested attribute is None."""
if item in ["echo", "tv"]:
if object.__getattribute__(self,"echo") is None: # Echo data not present
return object.__getattribute__(self,"tv") # Select TV data
elif object.__getattribute__(self,"tv") is None: # TV data not present
return object.__getattribute__(self,"echo") # Select Echo data
else:
return object.__getattribute__(self,item) # Return all data
else:
return object.__getattribute__(self,item) # Return all data
class Reaction(object):
def __init__(self, inputLine, sourceType=None):
#self.reactionName = QVTorQPObject()
self.exponentn = QVTorQPObject()
self.comment = QVTorQPObject()
self.readIn(inputLine, sourceType=sourceType)
products, reactants = self.reactionName.split(">")
self.products = [product.strip() for product in products.split("+")]
self.reactants = [reactant.strip() for reactant in reactants.split("+")]
def readIn(self, inputLine, sourceType=None):
if sourceType == "echo": # Parsed reaction line for combined format
echoPart = inputLine.split("|")[0]
reactionName = inputLine.split(":")[0].strip()
exponentn = echoPart.split("[")[1].split("]")[0].strip() # inputLine.split("[")[1].split("]")[0].strip()
comment = "%".join(echoPart.split("%")[1:]).strip() # "%".join(inputLine.split("%")[1:]).strip()
# Store the objects
self.reactionName = reactionName
self.exponentn.echo = exponentn
self.comment.echo = comment
elif sourceType == "tv": # Parsed reaction line for combined format
tvPart = inputLine.split("|")[1]
reactionName = inputLine.split(":")[0].strip()
comment = "%".join(tvPart.split("!")[1:]).strip() # "%".join(inputLine.split("!")[1:]).strip()
# Store the objects
self.reactionName = reactionName
self.comment.tv = comment
elif sourceType.lower() == "unified":
reaction = inputLine.split(":")[0]
echoInput, tvInput = ":".join(inputLine.split(":")[1:]).split("|")
echoInput = reaction + ":" + echoInput
tvInput = reaction + ":" + tvInput
if "Not present in TV" not in tvInput:
self.readIn(inputLine, sourceType="tv")
if "Not present in Echo" not in echoInput:
self.readIn(inputLine, sourceType="echo")
else:
raise SourceNotDefinedException("'%s' is not a valid 'sourceType'" % sourceType) # Otherwise print
def __repr__(self):
return str({"reactionName": self.reactionName, "exponentn": self.exponentn, "comment": self.comment, })
return str(self.reactionName) # Returns all relevant reactions
keykeyDict = {}
for key in reactionDict.keys():
keykeyDict[key] = key
formatString = "{reactionName:<40s} {comment:<10s}" # TV format
formatString = "{reactionName:<40s} {exponentn:<10s} {comment:<10s}" # Echo format
return formatString.format(**keykeyDict)
return formatString.format(**reactionDict)
def toDict(self, priority="tv"):
"""Returns a dictionary of all the variables, in the form {"comment":<>, "exponentn":<>, ...}. Design used is to be passed into the echo and tv style line format statements."""
if priority in ["echo", "tv" # Creating the dictionary by a large, horrible, list comprehension, to avoid even more repeated text
return dict([("reactionName", self.reactionName)] + [(attributeName, self.__getattribute__(attributeName).__getattribute__(priority))
for attributeName in ["exponentn", "comment"]])
else:
raise SourceNotDefinedException("{0} source type not recognised.".format(priority)) # Otherwise print
def find_allReactions(allReactions, reactant_set):
"""
reactant_set is the set of reactants that you want to grab all reactions which are relevant allReactions is just the set of reactions you're considering. Need to repeatedly loop through all reactions. If the current reaction only contains reactants in the reactant_set, then add all its products to the reactant set. Repeat this until reactant_set does not get larger.
"""
reactant_set = set(reactant_set) # this means that we can pass a list, but it will always be treated as a set.
#Initialise the list of reactions that we'll eventually return
relevant_reactions = []
previous_reactant_count = None
while len(reactant_set) != previous_reactant_count:
previous_reactant_count = len(reactant_set)
for reaction in allReactions:
if set(reaction.reactants).issubset(reactant_set):
relevant_reactions.append(reaction)
reactant_set = reactant_set.union(set(reaction.products))
return relevant_reactions
print find_allReactions(allReactions, ["BR"])
Current output:
'{'exponentn': {'tv': '0', 'echo': '0'}, 'comment': {'tv': 'BR-NOT USED', 'echo': 'BR-NOT USED'},'reactionName': 'E + BR > BR* + E', {'exponentn': {'qvt': '0', 'qp': '0'}, 'comment': {'qvt': 'BR+ -RECOMBINATION', 'qp': 'BR+ -RECOMBINATION'},'reactionName': 'E + BR* > BR* + E'
Desired output:
reactionName exponentn comment
E + BR > BR* + E 0 BR+ -RECOMBINATION
E + BR* > BR* + E 0 BR-NOT USED
如果您的数据按特定顺序添加到字典中,并且您想要保留该顺序,则需要使用collections.OrderedDict
。
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