I would like to apply some pairwise correlation estimator on all the columns of large matrix. Since I am working with large dimensions, I am looking for a function that might be of help here. I have been experimenting with the apply
function but I have not gotten very far so all help is greatly appreciated.
require(ccaPP)
require(mvtnorm)
d<- 10
Sigma <- matrix(0.2, nrow = d, ncol = d)
diag(Sigma) <- 1
#Data generation
X <- rmvnorm(100, sigma = Sigma) # 100 x d matrix
Q <- apply(X, 2, FUN = corQuadrant, consistent = TRUE)
I apologise if this has been asked before but a search did not reveal something I can use. Thank you.
Nested for loops are one way:
require(ccaPP)
require(mvtnorm)
d<- 10
Sigma <- matrix(0.2, nrow = d, ncol = d)
diag(Sigma) <- 1
#Data generation
X <- rmvnorm(100, sigma = Sigma) # 100 x d matrix
Q <- matrix(nrow = d,ncol = d)
for (i in 1: (d-1)) {
for (j in (i+1):d) {
Q[i,j] <- corQuadrant( X[,i], X[,j] )
}
}
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