Hey I know there are lots of questions about this particular error but i still cant find what is wrong, pretty new to R and coding in general. here is a link to may data
https://www.dropbox.com/s/qfo5rp7ywgsgxhy/CRERDATA.csv?dl=0
and here is my code to make the graph
library(car)
library(ggplot2)
library(Rmisc)
library(dunn.test)
library(FSA)
index_sum <- summarySE(CRERDATA, measurevar = "index", groupvars = c("site", "scenario"), na.rm = TRUE)
index_graph <- ggplot(CRERDATA, aes(x = index_sum$site, y = index_sum$index, fill = index_sum$scenario)) +
geom_bar(aes(fill = index_sum$scenario), position = position_dodge(), stat="identity") + ylab("Bleaching index") + xlab("Sites") +
labs(fill = "scenario") + scale_fill_grey() + theme_minimal() +
geom_errorbar(aes(ymin = index_sum$index-se, ymax = index_sum$index+se), width = .2, position = position_dodge(.9), color = "red")
You have specified CRERDATA
in the ggplot as data
, when you are actually using index_sum
.
Load necessary packages:
library(ggplot2)
library(Rmisc)
Read data and summarise:
CRERDATA <- read.csv('CRERDATA.csv')
index_sum <- summarySE(CRERDATA, measurevar = "index", groupvars = c("site", "scenario"), na.rm = TRUE)
Instead of CRERDATA
, use index_sum
. You then don't need to use the dollar sign $
to access columns:
ggplot(index_sum, aes(x = site, y = index, fill = scenario)) +
geom_bar(aes(fill = scenario), position = position_dodge(), stat="identity") +
ylab("Bleaching index") + xlab("Sites") + labs(fill = "scenario") + scale_fill_grey() +
theme_minimal() +
geom_errorbar(aes(ymin = index-se, ymax = index+se), width = .2, position = position_dodge(.9), color = "red")
The result:
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