I'm trying to create a plot using heatmap.2
but I keep receiving the error must have one more break than colour
.
In case it's of interest I'm adapting this chap's code: https://sebastianraschka.com/Articles/heatmaps_in_r.html
Here is the portion of the code in question:
# creates a own color palette
my_palette <- colorRampPalette(c("snow", "yellow", "darkorange", "red"))(n = 299)
# (optional) defines the color breaks manually for a "skewed" color transition
col_breaks = c(seq(0,0.15,length=100), #white
seq(0.16,0.29,length=100), # for yellow
seq(0.3,0.5,length=100), # for orange
seq(0.51,1,length=100)) # for red
Now something that is really confusing me is that this works:
# creates a own color palette
my_palette <- colorRampPalette(c("snow", "yellow", "red"))(n = 299)
# (optional) defines the color breaks manually for a "skewed" color transition
col_breaks = c(seq(0,0.29,length=100), #white
seq(0.3,0.5,length=100), # for yellow
seq(0.51,1,length=100)) # for red
As I seem to have modified the original code correctly once before I'm quite confused as to why I've failed to do so again.
The solution is:
# creates a own color palette
my_palette <- colorRampPalette(c("snow", "yellow", "darkorange", "red"))(n = 399)
# (optional) defines the color breaks manually for a "skewed" color transition
col_breaks = c(seq(0,0.15,length=100), #white
seq(0.16,0.29,length=100), # for yellow
seq(0.3,0.5,length=100), # for orange
seq(0.51,1,length=100)) # for red
with the only relevant change being n=399
, since you define col_breaks of length 400.
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