I have a made a heatmap in R using ggplot.
Example
# Libraries
library(tidyverse)
# Create data frame
df <- data.frame(test = rep(c("testA-01", "testA-02", "testA-03", "testB-01", "testB-02", "testB-03", "testC-01", "testC-02", "testC-03"),3),
time = c( rep(0,9), rep(1, 9), rep(2, 9) ),
score = sample(1:10, 27, replace = TRUE) )
# Create heatmap
ggplot(data = df, mapping = aes(x = time, y = test)) +
geom_tile(mapping = aes(fill = score, width=0.9, height=0.9)) +
scale_fill_gradientn(limits = c(1,10), colours=c("grey95", "grey40", "red"), na.value = "white" ) +
scale_y_discrete(name = "Test", limits = c("testC-03", "testC-02", "testC-01", "testB-03", "testB-02", "testB-01", "testA-03",
"testA-02", "testA-01")) +
theme_classic()
This lead to the following plot:
I would like to bundle the labels on the y-axis, so that I do not repeat "Test[letter]" three times for each test. I am able to do it manually, however, I thought maybe it is possible to use ggplot. The first part of the solution is to remove the "Test[letter]" part from the limits
of scale_y_discrete()
. Next I would like to add the labels vertically and grouped per test on the y-axis (preferably with a vertical line grouping the tests), like this:
Is this possible in ggplot? And if so, how do you do this?
Some rearrangements of the dataframe eases the plotting:
df <- data.frame(batch = c( rep("TestA",9), rep("TestB", 9), rep("TestC", 9) ),
test = rep(c(1,2,3),9),
time = rep(c(0,0,0,1,1,1,2,2,2),3),
score = sample(1:10, 27, replace = TRUE) )
Plot
With the facet_grid()
function it is possible to facet the data in the plot. Using the annotation_custom()
function of ggplot
and coord_cartesian()
, I was able to add 'grouping' lines.
library(tidyverse)
library(grid)
ggplot(data = df, mapping = aes(x = time, y = test)) +
geom_tile(mapping = aes(fill = score, width=0.9, height=0.9)) +
scale_fill_gradientn(limits = c(1,10), colours=c("grey95", "grey40", "red"), na.value = "white" ) +
theme_classic() +
scale_y_reverse() +
facet_grid(batch ~ ., space="free_x", scales="free_y", switch="y") +
theme(strip.placement = "outside",
strip.background = element_rect(fill=NA,colour=NA),
panel.spacing=unit(0,"cm"), axis.title.y = element_blank()) +
annotation_custom(grob = linesGrob(), xmin = -0.75, xmax = -0.75, ymin = -3.25, ymax = -0.75) +
coord_cartesian(clip="off")
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