I have an app connecting via https where the web server has a self signed SSL. Is this allowed by apple or does anything have to be done before submission?
Yes, you can do it, you can find the answer in this question
You need to define in your info.plist your domain.
<key>NSAppTransportSecurity</key>
<dict>
<key>NSAllowsArbitraryLoads</key>
<true/>
<key>NSExceptionDomains</key>
<dict>
<key>example.com</key>
<dict>
<key>NSExceptionAllowsInsecureHTTPLoads</key>
<true/>
<key>NSIncludesSubdomains</key>
<true/>
</dict>
</dict>
</dict>
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