So I am writing custom dataset for medical images, with .nii (NIFTI1 format), but there is a confusion. My dataloader returns the shape torch.Size (1 ...

I know very well that I am not asking a specific question. But I am asking for guidance about how to go about doing some work with medical imaging usi ...

I am working with code from here (paper here) that creates a GAN. I am trying to apply this to a new domain, switching from their application on MNIST ...

currently I am developing a new network using NiftyNet and would need some help. I am trying to implement an Autofocus Layer [1] as proposed in the p ...

I'm trying to train a network using NiftyNet with my own data (CT images and their corresponding labels). I designed the Net class shortly following s ...

I want to do a 2 class segmentation using dense_vnet model available on niftynet which originally does a 9 class segmentation I tried to retrain only ...

I'm trying to run Niftynet on my PC. but it keeps showing this error. CPU version for tensorflow INFO:tensorflow:TensorFlow version 1.13.1 Do i need ...

I loaded nifty files(These were as well converted from .pack CT scans). My goal is to use the threashold otsu algorithm to mask it from the background ...

I want to use niftynet pretrained segmentation model for segmenting custom data. I downloaded the pre trained weights and and modified model_dir path ...

I'm trying to run Niftynet on my PC. but it keeps showing this error. I had a CPU version for tensorflow and it worked. After that I installed tensorf ...

ValueError raised I've been using NiftyNet and it has been working before, but recently I've encountered this problem with it not recognizing the T1 ...

I'm using Niftynet to train a CNN using 2 GPUs. As I understand, each GPU is trained independently as I get two loss values per iteration. Are the res ...

I can't seem to find where my inference models are, I have the .csv files and can see the loss but I can't find the label files or images themselves. ...

In NiftyNet framework - what is the purpose of interp_order param in config file? There is very short explanation in documentation which is not clear ...

I'm running a 3-class segmentation problem, with my Label images being "0(many),1(some),2(some)". But I realized when NiftyNet read the images, it onl ...

I want to implement transfer learning using the Dense V-Net architecture. As I was searching on how to do this, I found that this feature is currently ...

I am trying to run classification using NiftyNet. I wanted to run training and I have a training set with images and a class assigned to them, like im ...

Neural network newbie here. I've been testing Niftynet and achieved decent single-class 3D segmentation predictions on an own MRI data set with dense_ ...

I am using Niftynet for medical image segmentation. I have seen a great tutorial on spatial_window_shape parameter constraints here https://nbviewer.j ...

Is it possible to set output format in configuration file for Niftynet? e.g. I would like to have my output as png. My output is currently in .nii.gz ...