从enumerate（）访问每个索引结果-Python

Question

我有数据，看起来像这样：

Name Nm1    *    *
Ind1     AACTCAGCTCACG
Ind2     GTCATCGCTACGA 
Ind3     CTTCAAACTGACT

我需要从“名称”行中用星号标记的每个位置抓取字母，并将其连同星号的索引一起打印

所以结果是

Ind1, 12, T
Ind2, 12, A
Ind3, 12, C
Ind1, 17, T
Ind2, 17, T
Ind3, 17, T

我试图使用enumerate()检索星号的位置，然后我的想法是，我可以使用这些索引来获取字母。

import sys
import csv

input = open(sys.argv[1], 'r')
Output = open(sys.argv[1]+"_processed", 'w')

indlist = (["Individual_1,", "Individual_2,", "Individual_3,"])

with (input) as searchfile:
    for line in searchfile:
        if '*' in line:
            LocusID = line[2:13]
            LocusIDstr = LocusID.strip()
            hit = line
            for i, x in enumerate(hit):
                     if x=='*':
                      position = i
                      print position

    for item in indlist:
        Output.write("%s%s%s\n" % (item, LocusIDstr, position))

Output.close()

如果enumerate()输出例如

12
17

如何分别访问每个索引？

另外，当我打印位置时，我会得到想要的数字。 但是，当我写入文件时，仅写入最后一个位置。 为什么是这样？

- - - - - - - - 编辑 - - - - - - - - -

根据下面的建议，我已经编辑了我的代码，使对我来说更简单了。

import sys
import csv

input = open(sys.argv[1], 'r')
Output = open(sys.argv[1]+"_FGT_Data", 'w')

indlist = (["Individual_1,", "Individual_2,", "Individual_3,"])

with (input) as searchfile:
    for line in searchfile:
        if '*' in line:
            LocusID = line[2:13]
            LocusIDstr = LocusID.strip()
            print LocusIDstr
            hit = line
            for i, x in enumerate(hit):
                    if x=='*':
                      position = i
                      #print position

input = open(sys.argv[1], 'r')

with (input) as searchfile:
    for line in searchfile:
        if line [0] == ">":
            print line[position], position

with (Output) as writefile:
    for item in indlist:
        writefile.write("%s%s%s\n" % (item, LocusIDstr, position))

Output.close()

但是，对于如何访问每个索引，我仍然没有解决方案。

Answer 1

编辑已更改，以处理您在评论中给我的文件。 如果您自己创建了此文件，请考虑下次使用列。

import sys

read_file = sys.argv[1]
write_file = "%s_processed.%s"%(sys.argv[1].split('.')[0],sys.argv[1].split('.')[1])
indexes = []
lines_to_write = []

with open(read_file,'r') as getindex:
    first_line = getindex.readline()
    for i, x in enumerate(first_line):
        if x == '*':
            indexes.append(i-11)

with open(read_file,'r') as getsnps:
    for line in getsnps:
        if line.startswith(">"):
            sequence = line.split("    ")[1]
            for z in indexes:
                string_to_append = "%s\t%s\t%s"%(line.split("    ")[0],z+1,sequence[z])
                lines_to_write.append(string_to_append)

with open(write_file,"w") as write_file:
    write_file.write("\n".join(lines_to_write))