[英]Issues with the ADAPTS- R package
我正在使用下面的函数buildSeed()
:
library(ADAPTS)
ct1 <- runif(1000, 0, 100)
ct2 <- runif(1000, 0, 100)
dataMat <- cbind(ct1, ct1, ct1, ct1, ct1, ct1, ct2, ct2, ct2, ct2)
rownames(dataMat) <- make.names(rep('gene', nrow(dataMat)), unique=TRUE)
noise <- matrix(runif(nrow(dataMat)*ncol(dataMat), -2, 2), nrow = nrow(dataMat), byrow = TRUE)
dataMat <- dataMat + noise
newSigMat <- buildSeed(trainSet=dataMat)
我得到错误:
Error in buildSeed(trainSet = dataMat) :
could not find function "buildSeed"
这是我正在尝试使用的数据:
dim(expr_mat)
> [1] 9978 237
head(expr_mat)
> mo_ctr_dmso_0_5h_d2_t1 mo_ctr_dmso_0_5h_d3_t1 mo_ctr_dmso_1h_d1_t1 mo_ctr_dmso_1h_d2_t2 mo_ctr_dmso_1h_d2_t1
RP11-459I19.1 9.244510e-01 2.912490e-01 2.495870e+00 8.486300e-01 1.963290e+00
RP13-270P17.3 2.259280e+00 5.893050e-01 3.720860e+00 2.969720e+00 4.102030e+00
RP11-574K11.31 1.906047e+00 1.390515e-01 1.458889e+00 6.886160e-01 1.053803e+00
RP11-212I21.5 4.394590e+00 7.547210e-02 5.057090e+00 5.420640e-01 3.694030e+00
它适用于 R 4.0.2。 谢谢大家!
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