R CMD SHLIB 编译 Fortran 代码时出错
[英]Error in R CMD SHLIB compiling Fortran code
问题描述
I'm trying to compile a Fortran subroutine in the remote machine, when I run:
当我运行时，我试图在远程机器上编译 Fortran 子例程：
R CMD SHLIB -fPIC vintp2p_afterburner_wind.f
I get the following error:我收到以下错误：
gcc -shared -L/sw/installed/R/3.6.2-fosscuda-2019b/lib64/R/lib -L/sw/installed/pocl/1.4-GCC-8.3.0/lib64 -L/sw/installed/ImageMagick/7.0.9-5-GCCcore-8.3.0/lib -L/sw/installed/GSL/2.6-GCC-8.3.0/lib -L/sw/installed/UDUNITS/2.2.26-GCCcore-8.3.0/lib -L/sw/installed/HDF5/1.10.5-gompic-2019b/lib -L/sw/installed/ICU/64.2-GCCcore-8.3.0/lib -L/sw/installed/libsndfile/1.0.28-GCCcore-8.3.0/lib -L/sw/installed/FFTW/3.3.8-gompic-2019b/lib -L/sw/installed/NLopt/2.6.1-GCCcore-8.3.0/lib64 -L/sw/installed/GMP/6.1.2-GCCcore-8.3.0/lib -L/sw/installed/libxml2/2.9.9-GCCcore-8.3.0/lib -L/sw/installed/cURL/7.66.0-GCCcore-8.3.0/lib -L/sw/installed/Tk/8.6.9-GCCcore-8.3.0/lib -L/sw/installed/Java/11.0.2/lib -L/sw/installed/LibTIFF/4.0.10-GCCcore-8.3.0/lib -L/sw/installed/libjpeg-turbo/2.0.3-GCCcore-8.3.0/lib64 -L/sw/installed/libpng/1.6.37-GCCcore-8.3.0/lib -L/sw/installed/PCRE/8.43-GCCcore-8.3.0/lib -L/sw/installed/SQLite/3.29.0-GCCcore-8.3.0/lib -L/sw/installed/zlib/1.2.11-GCCcore-8.3.0/lib -L/sw/installed/XZ/5.2.4-GCCcore-8.3.0/lib -L/sw/installed/bzip2/1.0.8-GCCcore-8.3.0/lib -L/sw/installed/ncurses/6.1-GCCcore-8.3.0/lib -L/sw/installed/libreadline/8.0-GCCcore-8.3.0/lib -L/sw/installed/cairo/1.16.0-GCCcore-8.3.0/lib -L/sw/installed/libGLU/9.0.1-GCCcore-8.3.0/lib -L/sw/installed/Mesa/19.1.7-GCCcore-8.3.0/lib -L/sw/installed/X11/20190717-GCCcore-8.3.0/lib -L/sw/installed/ScaLAPACK/2.0.2-gompic-2019b/lib -L/sw/installed/OpenBLAS/0.3.7-GCC-8.3.0/lib -L/sw/installed/GCCcore/8.3.0/lib64 -L/sw/installed/GCCcore/8.3.0/lib -L/sw/installed/CUDA/10.1.243/lib64 -o vintp2p_afterburner_wind.so vintp2p_afterburner_wind.o -fPIC -lgfortran -L/sw/installed/R/3.6.2-fosscuda-2019b/lib64/R/lib -lR
/sw/installed/binutils/2.28-GCCcore-6.4.0/bin/ld.gold: error: vintp2p_afterburner_wind.o: requires dynamic R_X86_64_PC32 reloc against 'log' which may overflow at runtime; recompile with -fPIC
collect2: error: ld returned 1 exit status
make: *** [vintp2p_afterburner_wind.so] Error 1
The subroutine has a log() function.该子程序有一个log()函数。 I'm totally new to this error and I don't know where to start with!我对这个错误完全陌生，我不知道从哪里开始！
1 个解决方案
解决方案1
1 已采纳 2020-10-01 12:37:35
也许有人会发现它很有用：编译是通过以下方式完成的：
gfortran -fPIC -shared -ffree-form vintp2p_afterburner_wind.f -o vintp2p_afterburner_wind.so
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