如何获得所有变量的 p 值，然后使用 function ordiR2step？

Question

In R: I'm doing a partial RDA, using a forward selection procedure to identify the explanatory variables which are most important for a coleoptera community.

But how do I get not only adjusted R2 values, but also p-values for all tested variables when using function ordiR2step?

And why is function ordiR2step so much faster than ordistep in doing so??

Answer 1

I first answer to the last question: ordiR2step is so much faster than ordistep because it does not estimate all p -values.

The p -values are found with permutation tests, and running those tests to all variables takes time.

There is no way of getting all so-called p -values in ordiR2step because the method does not use those, as is explained in the source paper cited (Blanchet et al. 2008 in the help page) and the help page. That is the reason why the method is called ordi R2 step : it uses primarily R ² instead of p -values. If you want to get all p -values, you must use a method that was written to evaluate those, that is ordistep .