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如何从 scikit-image 导入分水岭函数？

[英]How can I import watershed function from scikit-image?

原文 2022-06-28 22:44:36 3 1 python/ image/ scikit-image/ python-napari

Using Napari Image Analysis GUI to run the Allen Cell Segmenter (no response in Napari github or Allen Cell Forum, thought I'd try here) and getting the following error when I attempt to run the watershed for cutting function:使用 Napari 图像分析 GUI 运行 Allen Cell Segmenter（在 Napari github 或 Allen Cell 论坛中没有响应，我想我会在这里尝试）并在我尝试运行分水岭进行切割功能时出现以下错误：

ImportError: cannot import name 'watershed' from 'skimage.morphology' (C:\Users\Murryadmin\anaconda3\envs\napari-env\lib\site-packages\skimage\morphology_ init _.py) ImportError: 无法从 'skimage.morphology' 导入名称 'watershed' (C:\Users\Murryadmin\anaconda3\envs\napari-env\lib\site-packages\skimage\morphology_init _.py )

c:\users\murryadmin\anaconda3\envs\napari-env\lib\site-packages\aicssegmentation\core\utils.py(449)watershed_wrapper() -> from skimage.morphology import watershed, dilation, ball c:\users\murryadmin\anaconda3\envs\napari-env\lib\site-packages\aicssegmentation\core\utils.py(449)watershed_wrapper() -> 从 skimage.morphology 导入分水岭、膨胀、球

Anyone have any potential fixes for this?有人对此有任何潜在的解决方法吗？

Thanks谢谢

1 个解决方案

watershed was moved from skimage.morphology to skimage.segmentation in version 0.17.在 0.17 版中，分水岭从 skimage.morphology 移至 skimage.segmentation。 There was a pointer from morphology to the new function in segmentation in 0.17 and 0.18, but it was removed in 0.19.在 0.17 和 0.18 中有一个从形态学指向分割中新功能的指针，但在 0.19 中被删除了。 The Allen Cell Segmenter needs to be updated to match the more modern scikit-image version, so I would raise an issue in their GitHub repository if I were you. Allen Cell Segmenter 需要更新以匹配更现代的 scikit-image 版本，所以如果我是你，我会在他们的 GitHub 存储库中提出问题。

Downgrading to scikit-image 0.18 could fix the Allen Cell Segmenter itself, but unfortunately napari requires 0.19+.降级到 scikit-image 0.18 可以修复 Allen Cell Segmenter 本身，但不幸的是 napari 需要 0.19+。