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如何获取Anndata的特定RNA序列？

[英]How to get specific RNA sequence of Anndata?

原文 2022-07-07 16:05:14 9 1 python-3.x/ rna-seq/ scanpy

I have a question where I don´t know how to start this.我有一个问题，我不知道如何开始。 We did a scRNA sequencing experiment and I now have an AnnData dataset.我们做了一个 scRNA 测序实验，我现在有一个 AnnData 数据集。 I already know a lot about this dataset mainly by using scanpy library and I would like to "finalise" the analysis by extracting genes that have a specific RNA sequence in the 3'UTR.我主要通过使用 scanpy 库已经对该数据集了解很多，我想通过提取在 3'UTR 中具有特定 RNA 序列的基因来“完成”分析。 Unfortunately I have no idea how to approach this since I am no bioinformatician and couldn´t find a tutorial to do this.不幸的是，我不知道如何解决这个问题，因为我不是生物信息学家，也找不到做这件事的教程。 Can someone please help me with this problem?有人可以帮我解决这个问题吗？

Here how it looks like.这是它的样子。

Thanks in advance!提前致谢！

1 个解决方案

I just found a way around in R.我刚刚在 R 中找到了解决方法。 It is on the bases on BSgenome.Mmusculus.UCSC.mm10.它基于 BSgenome.Mmusculus.UCSC.mm10。 You can find the answer here .你可以在这里找到答案。

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