Cant compile tokumx/mongodb on osx mavericks

Question

I am trying to compile tokumx (mongodb fork with transactions) on mavericks. It compiles for some time and then errors out with this message:

Linking build/darwin/64/release/mongo/mongodump
Undefined symbols for architecture x86_64:
  "std::tr1::hash<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >::operator()(std::basic_string<char, std::char_traits<char>, std::allocator<char> >) const", referenced from:
      std::tr1::_Hashtable<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> >, std::allocator<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> > >, std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> > >, std::equal_to<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::tr1::hash<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::tr1::__detail::_Mod_range_hashing, std::tr1::__detail::_Default_ranged_hash, std::tr1::__detail::_Prime_rehash_policy, false, false, true>::find(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const in configuration_variable_manager.o
      std::tr1::_Hashtable<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> >, std::allocator<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> > >, std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> > >, std::equal_to<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::tr1::hash<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::tr1::__detail::_Mod_range_hashing, std::tr1::__detail::_Default_ranged_hash, std::tr1::__detail::_Prime_rehash_policy, false, false, true>::_M_rehash(unsigned long) in configuration_variable_manager.o
      std::tr1::__detail::_Map_base<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> >, std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> > >, true, std::tr1::_Hashtable<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> >, std::allocator<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> > >, std::_Select1st<std::pair<std::basic_string<char, std::char_traits<char>, std::allocator<char> > const, boost::function<mongo::Status (std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)> > >, std::equal_to<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::tr1::hash<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::tr1::__detail::_Mod_range_hashing, std::tr1::__detail::_Default_ranged_hash, std::tr1::__detail::_Prime_rehash_policy, false, false, true> >::operator[](std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) in configuration_variable_manager.o
      mongo::InitializerDependencyGraph::addInitializer(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, boost::function<mongo::Status (mongo::InitializerContext*)> const&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) in initializer_dependency_graph.o


"std::__detail::_List_node_base::_M_unhook()", referenced from:
      mongo::DistributedLockPinger::_distLockPingThread(mongo::ConnectionString, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long long) in distlock.o
      std::list<mongo::FieldRangeSetPair, std::allocator<mongo::FieldRangeSetPair> >::_M_erase(std::_List_iterator<mongo::FieldRangeSetPair>) [clone .isra.535] in queryutil.o
      mongo::OrRangeGenerator::_popOrClause(mongo::FieldRangeSet const*, mongo::Collection*, int, mongo::BSONObj const&) in queryutil.o
      mongo::OrRangeGenerator::popOrClauseSingleKey()      in queryutil.o
      mongo::threadpool::ThreadPool::task_done(mongo::threadpool::Worker*) in thread_pool.o
      mongo::threadpool::ThreadPool::~ThreadPool() in thread_pool.o
      mongo::threadpool::ThreadPool::~ThreadPool() in thread_pool.o
      ...
ld: symbol(s) not found for architecture x86_64

Anyone knows exactly whats going on there?

Answer 1

This is caused by a mismatch between the standard library headers and library version, it's similar to this report http://gcc.gnu.org/bugzilla/show_bug.cgi?id=43882 .

OSX compilation isn't strictly supported for TokuMX yet, but I've been working on it recently. Make sure you have the latest Xcode and command line tools installed, and try compiling again with --cc=cc --cxx="c++ -std=c++11 -stdlib=libc++" as arguments to scons.

If that doesn't work, please also provide the command you used to try to build, and all of the preceding output, this would be a question better suited to the mailing list I think.