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Spring JPA (Hibernate) No qualifying bean of type: javax.persistence.EntityManagerFactory

I'm using Spring-boot, so a war deployed in Tomcat 7. When I start the app I get the following:

  Dec 30, 2013 7:41:06 PM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring FrameworkServlet 'dispatcherServlet'
2013-12-30 19:41:06 INFO  DispatcherServlet:461 - FrameworkServlet 'dispatcherServlet': initialization started
  2013-12-30 19:41:06 INFO  SimpleUrlHandlerMapping:315 - Mapped URL path [/**/favicon.ico] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
  2013-12-30 19:41:06 INFO  RequestMappingHandlerMapping:181 - Mapped "{[/user],methods=[GET],params=[],headers=[],consumes=[],produces=[],custom=[]}" onto public com.cloudfordev.controlpanel.orm.User com.cloudfordev.controlpanel.GetController.getUser(int)
  2013-12-30 19:41:07 INFO  SimpleUrlHandlerMapping:315 - Mapped URL path [/**] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
  2013-12-30 19:41:07 INFO  SimpleUrlHandlerMapping:315 - Mapped URL path [/webjars/**] onto handler of type [class org.springframework.web.servlet.resource.ResourceHttpRequestHandler]
  2013-12-30 19:41:08 INFO  DispatcherServlet:480 - FrameworkServlet 'dispatcherServlet': initialization completed in 1957 ms
  Dec 30, 2013 7:41:08 PM org.apache.coyote.AbstractProtocol start
INFO: Starting ProtocolHandler ["http-nio-8080"]
Dec 30, 2013 7:41:08 PM org.apache.tomcat.util.net.NioSelectorPool getSharedSelector
INFO: Using a shared selector for servlet write/read
Dec 30, 2013 7:41:08 PM org.apache.coyote.AbstractProtocol stop
INFO: Stopping ProtocolHandler ["http-nio-8080"]
Dec 30, 2013 7:41:08 PM org.apache.coyote.AbstractProtocol pause
INFO: Pausing ProtocolHandler ["http-nio-8080"]
Dec 30, 2013 7:41:08 PM org.apache.catalina.core.StandardService stopInternal
INFO: Stopping service Tomcat
Dec 30, 2013 7:41:08 PM org.apache.coyote.AbstractProtocol stop
INFO: Stopping ProtocolHandler ["http-nio-8080"]
Dec 30, 2013 7:41:08 PM org.apache.coyote.AbstractProtocol destroy
INFO: Destroying ProtocolHandler ["http-nio-8080"]
2013-12-30 19:41:08 INFO  AutoConfigurationReportLoggingInitializer$AutoConfigurationReportLogger:108 -


=========================
AUTO-CONFIGURATION REPORT
=========================


Positive matches:
-----------------

   MessageSourceAutoConfiguration
      - @ConditionalOnMissingBean (types: org.springframework.context.MessageSource; SearchStrategy: all) found no beans (OnBeanCondition)

   PropertyPlaceholderAutoConfiguration#propertySourcesPlaceholderConfigurer
      - @ConditionalOnMissingBean (types: org.springframework.context.support.PropertySourcesPlaceholderConfigurer; SearchStrategy: current) found no beans (OnBeanCondition)

   DataSourceAutoConfiguration
      - @ConditionalOnClass classes found: org.springframework.jdbc.datasource.embedded.EmbeddedDatabaseType (OnClassCondition)
      - @ConditionalOnClass classes found: org.springframework.jdbc.datasource.embedded.EmbeddedDatabaseType (OnClassCondition)

   DataSourceTransactionManagerAutoConfiguration
      - @ConditionalOnClass classes found: org.springframework.jdbc.core.JdbcTemplate,org.springframework.transaction.PlatformTransactionManager (OnClassCondition)
      - @ConditionalOnClass classes found: org.springframework.jdbc.core.JdbcTemplate,org.springframework.transaction.PlatformTransactionManager (OnClassCondition)

   JpaBaseConfiguration.JpaWebConfiguration
      - found web application StandardServletEnvironment (OnWebApplicationCondition)
      - SpEL expression on org.springframework.boot.autoconfigure.orm.jpa.JpaBaseConfiguration$JpaWebConfiguration: #{true} (OnExpressionCondition)

   DispatcherServletAutoConfiguration
      - found web application StandardServletEnvironment (OnWebApplicationCondition)
      - @ConditionalOnClass classes found: org.springframework.web.servlet.DispatcherServlet (OnClassCondition)
      - found web application StandardServletEnvironment (OnWebApplicationCondition)
      - @ConditionalOnClass classes found: org.springframework.web.servlet.DispatcherServlet (OnClassCondition)
      - @ConditionalOnBean (types: org.springframework.boot.context.embedded.EmbeddedServletContainerFactory; SearchStrategy: all) found the following [tomcatEmbeddedServletContainerFactory] (OnBeanCondition)

   DispatcherServletAutoConfiguration#dispatcherServlet
      - no DispatcherServlet found (DispatcherServletAutoConfiguration.DefaultDispatcherServletCondition)

   EmbeddedServletContainerAutoConfiguration
      - found web application StandardServletEnvironment (OnWebApplicationCondition)
      - found web application StandardServletEnvironment (OnWebApplicationCondition)

   EmbeddedServletContainerAutoConfiguration.EmbeddedTomcat
      - @ConditionalOnClass classes found: javax.servlet.Servlet,org.apache.catalina.startup.Tomcat (OnClassCondition)
      - @ConditionalOnClass classes found: javax.servlet.Servlet,org.apache.catalina.startup.Tomcat (OnClassCondition)
      - @ConditionalOnMissingBean (types: org.springframework.boot.context.embedded.EmbeddedServletContainerFactory; SearchStrategy: current) found no beans (OnBeanCondition)

   ServerPropertiesAutoConfiguration#serverProperties
      - @ConditionalOnMissingBean (types: org.springframework.boot.context.embedded.properties.ServerProperties; SearchStrategy: all) found no beans (OnBeanCondition)

   WebMvcAutoConfiguration
      - found web application StandardServletEnvironment (OnWebApplicationCondition)
      - @ConditionalOnClass classes found: javax.servlet.Servlet,org.springframework.web.servlet.DispatcherServlet,org.springframework.web.servlet.config.annota
tion.WebMvcConfigurerAdapter (OnClassCondition)
      - found web application StandardServletEnvironment (OnWebApplicationCondition)
      - @ConditionalOnClass classes found: javax.servlet.Servlet,org.springframework.web.servlet.DispatcherServlet,org.springframework.web.servlet.config.annota
tion.WebMvcConfigurerAdapter (OnClassCondition)
      - @ConditionalOnMissingBean (types: org.springframework.web.servlet.config.annotation.WebMvcConfigurationSupport; SearchStrategy: all) found no beans (OnBeanCondition)

   WebMvcAutoConfiguration#hiddenHttpMethodFilter
      - @ConditionalOnMissingBean (types: org.springframework.web.filter.HiddenHttpMethodFilter; SearchStrategy: all) found no beans (OnBeanCondition)

   WebMvcAutoConfiguration.WebMvcAutoConfigurationAdapter#defaultViewResolver
      - @ConditionalOnMissingBean (types: org.springframework.web.servlet.view.InternalResourceViewResolver; SearchStrategy: all) found no beans (OnBeanCondition)


Negative matches:
-----------------

   RabbitAutoConfiguration
      - required @ConditionalOnClass classes not found: org.springframework.amqp.rabbit.core.RabbitTemplate,com.rabbitmq.client.Channel (OnClassCondition)

   AopAutoConfiguration
      - required @ConditionalOnClass classes not found: org.aspectj.lang.annotation.Aspect,org.aspectj.lang.reflect.Advice (OnClassCondition)

   BatchAutoConfiguration
      - required @ConditionalOnClass classes not found: org.springframework.batch.core.launch.JobLauncher (OnClassCondition)

   JpaRepositoriesAutoConfiguration
      - required @ConditionalOnClass classes not found: org.springframework.data.jpa.repository.JpaRepository (OnClassCondition)

   MongoRepositoriesAutoConfiguration
      - required @ConditionalOnClass classes not found: com.mongodb.Mongo,org.springframework.data.mongodb.repository.MongoRepository (OnClassCondition)

   DataSourceAutoConfiguration.DbcpConfiguration
      - org.apache.commons.dbcp.BasicDataSource DataSource class not found (DataSourceAutoConfiguration.BasicDatabaseCondition)

   DataSourceAutoConfiguration.EmbeddedConfiguration
      - no embedded database detected (DataSourceAutoConfiguration.EmbeddedDatabaseCondition)

   DataSourceAutoConfiguration.JdbcTemplateConfiguration
      - no existing bean configured database (DataSourceAutoConfiguration.DatabaseCondition)

   DataSourceAutoConfiguration.TomcatConfiguration
      - org.apache.tomcat.jdbc.pool.DataSource DataSource class not found (DataSourceAutoConfiguration.TomcatDatabaseCondition)

   DataSourceTransactionManagerAutoConfiguration#transactionManager
      - @ConditionalOnBean (types: javax.sql.DataSource; SearchStrategy: all) found no beans (OnBeanCondition)

   JmsTemplateAutoConfiguration
      - required @ConditionalOnClass classes not found: org.springframework.jms.core.JmsTemplate,javax.jms.ConnectionFactory (OnClassCondition)

   DeviceResolverAutoConfiguration
      - required @ConditionalOnClass classes not found: org.springframework.mobile.device.DeviceResolverHandlerInterceptor,org.springframework.mobile.device.DeviceHandlerMethodArgumentResolver (OnClassCondition)

   HibernateJpaAutoConfiguration
      - @ConditionalOnClass classes found: org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean,org.springframework.transaction.annotation.EnableTransactionManagement,javax.persistence.EntityManager,org.hibernate.ejb.HibernateEntityManager (OnClassCondition)
      - @ConditionalOnClass classes found: org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean,org.springframework.transaction.annotation.EnableTransactionManagement,javax.persistence.EntityManager,org.hibernate.ejb.HibernateEntityManager (OnClassCondition)
      - @ConditionalOnBean (types: javax.sql.DataSource; SearchStrategy: all) found no beans (OnBeanCondition)

   ReactorAutoConfiguration
      - required @ConditionalOnClass classes not found: reactor.spring.context.config.EnableReactor (OnClassCondition)

   ThymeleafAutoConfiguration
      - required @ConditionalOnClass classes not found: org.thymeleaf.spring3.SpringTemplateEngine (OnClassCondition)

   EmbeddedServletContainerAutoConfiguration.EmbeddedJetty
      - required @ConditionalOnClass classes not found: org.eclipse.jetty.server.Server,org.eclipse.jetty.util.Loader (OnClassCondition)

   MultipartAutoConfiguration
      - @ConditionalOnClass classes found: javax.servlet.Servlet,org.springframework.web.multipart.support.StandardServletMultipartResolver (OnClassCondition)
      - @ConditionalOnClass classes found: javax.servlet.Servlet,org.springframework.web.multipart.support.StandardServletMultipartResolver (OnClassCondition)
      - @ConditionalOnBean (types: javax.servlet.MultipartConfigElement; SearchStrategy: all) found no beans (OnBeanCondition)

   WebMvcAutoConfiguration.WebMvcAutoConfigurationAdapter#beanNameViewResolver
      - @ConditionalOnBean (types: org.springframework.web.servlet.View; SearchStrategy: all) found no beans (OnBeanCondition)

   WebMvcAutoConfiguration.WebMvcAutoConfigurationAdapter#viewResolver
      - @ConditionalOnBean (types: org.springframework.web.servlet.View; SearchStrategy: all) found no beans (OnBeanCondition)

   WebSocketAutoConfiguration
      - required @ConditionalOnClass classes not found: org.springframework.web.socket.WebSocketHandler (OnClassCondition)



  java.lang.reflect.InvocationTargetException
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:53)
        at java.lang.Thread.run(Unknown Source)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'userDao': Injection of persistence dependencies failed; nested exception is org.springframework.beans.factory.NoSuchBeanDefinitionException: No qualifying bean of type [javax.persistence.EntityManagerFactory] is defined at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.postProcessPropertyValues(PersistenceAnnotationBeanPostProcessor.java:356)

        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1180)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:537)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:475)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:300)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:228)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:296)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:195)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:660)
        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:760)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:482)
        at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122)
        at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:552)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:293)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:749)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:738)
        at com.cloudfordev.controlpanel.Application.main(Application.java:14)
        ... 6 more
Caused by: org.springframework.beans.factory.NoSuchBeanDefinitionException: No qualifying bean of type [javax.persistence.EntityManagerFactory] is defined
        at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.findDefaultEntityManagerFactory(PersistenceAnnotationBeanPostProcessor.java:559)
        at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.findEntityManagerFactory(PersistenceAnnotationBeanPostProcessor.java:515)
        at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor$PersistenceElement.resolveEntityManager(PersistenceAnnotationBeanPostProcessor.java:682)
        at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor$PersistenceElement.getResourceToInject(PersistenceAnnotationBeanPostProcessor.java:655)
        at org.springframework.beans.factory.annotation.InjectionMetadata$InjectedElement.inject(InjectionMetadata.java:150)
        at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:87)
        at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.postProcessPropertyValues(PersistenceAnnotationBeanPostProcessor.java:353)

        ... 22 more

This is how my Application boots:

@Configuration
@ComponentScan
@EnableAutoConfiguration
public class Application {

    public static void main(String[] args) {
        SpringApplication.run(Application.class, args);
    }
}

When my Spring controller handles the connection:

@Controller
public class GetController {

    private UserService userService;

    @Autowired 
    public void setUserService(UserService userService) {
        this.userService = userService;
    }

    @RequestMapping(value = "/user", method = RequestMethod.GET)
    public @ResponseBody User getUser(@RequestParam(value="id", required=true) int id) {
        User user = null;

        user = userService.getUser(id);

        return user;
    }
}

It does a getUser on the userService:

@Component
public class UserService {

    private UserDAO UserDao;

    public UserDAO getUserDao() {
        return UserDao;
    }

    @Autowired
    public void setUserDao(UserDAO UserDao) {
        this.UserDao = UserDao;
    }

    public User getUser(int id) {
        return getUserDao().load(id);
    }
}

Which uses the userDao to find the entity:

@Repository("userDao")
@Transactional(propagation=Propagation.REQUIRED)
public class UserDAO {

    @PersistenceContext
    private EntityManager entityManager;

    public void insert(User user) {
        entityManager.persist(user);
    }

    public User load(int id) {
        return entityManager.find(User.class, id);
    }
}

I have the following spring-config.xml in /src/main/resources:

<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:aop="http://www.springframework.org/schema/aop"
    xmlns:context="http://www.springframework.org/schema/context" xmlns:tx="http://www.springframework.org/schema/tx"
    xsi:schemaLocation="http://www.springframework.org/schema/beans
           http://www.springframework.org/schema/beans/spring-beans-3.0.xsd
           http://www.springframework.org/schema/aop
           http://www.springframework.org/schema/aop/spring-aop-3.0.xsd
           http://www.springframework.org/schema/context
           http://www.springframework.org/schema/context/spring-context-3.0.xsd
           http://www.springframework.org/schema/tx  
           http://www.springframework.org/schema/tx/spring-tx.xsd">

    <context:component-scan base-package="com.mydomain.orm" />

    <bean id="entityManagerFactory" class="org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean">
        <property name="persistenceXmlLocation" value="classpath:/persistence.xml" />
        <property name="persistenceUnitName" value="userPersistenceUnit" />
        <property name="dataSource" ref="dataSource" />
        <property name="jpaVendorAdapter" ref="jpaVendorAdapter" />
        <property name="jpaDialect" ref="jpaDialect" />
    </bean>

    <bean id="jpaVendorAdapter" class="org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter">
        <property name="database" value="HSQL" />
        <property name="databasePlatform" value="org.hibernate.dialect.HSQLDialect" />
    </bean>

    <bean id="jpaDialect" class="org.springframework.orm.jpa.vendor.HibernateJpaDialect" />

    <bean id="transactionManager" class="org.springframework.orm.jpa.JpaTransactionManager">
        <property name="entityManagerFactory" ref="entityManagerFactory" />
        <property name="dataSource" ref="dataSource" />
        <property name="jpaDialect" ref="jpaDialect" />
    </bean>

    <tx:annotation-driven transaction-manager="transactionManager" />

    <bean id="dataSource" class="org.springframework.jdbc.datasource.DriverManagerDataSource">
        <property name="driverClassName" value="org.postgresql.Driver" />
        <property name="url" value="jdbc:postgresql://localhost:5432/mydb" />
        <property name="username" value="my_user" />
        <property name="password" value="" />
    </bean>
</beans>

And last but not least the following /src/main/resources/persistence.xml:

<?xml version="1.0" encoding="UTF-8"?>
<persistence xmlns="http://java.sun.com/xml/ns/persistence"
    version="1.0">
    <persistence-unit name="userPersistenceUnit" transaction-type="RESOURCE_LOCAL" >
    <class>com.mydomain.orm.User</class>
</persistence-unit>
</persistence>  

What do I need to do to resolve this error?

You're wanting an EntityManager injected, but you don't have any injection annotations on the field, and "factory" is the wrong qualifier in any case. Annotate your field with @PersistenceContext , using unitName if needed to distinguish between multiple persistence units.

Answer to edited question: Your XML file isn't getting included, because you start from the Application class, and Spring just follows the @ComponentScan from there. Add this import to your Application class (or any scanned @Configuration class):

@ImportResource("classpath:spring-config.xml")

Alternately, you can migrate your XML configuration to the JavaConfig format, which Spring will component-scan.

Your problem is that your are using annotation configuration which already searches the classpath for annotated beans this tries to instantiate the UserDAO but your don't provide a EntityManagerFactory here.

You can combine the JavaConfig with the XML configuration via @ImportResource("classpath:spring-config.xml") .


@Configuration
@ComponentScan
@EnableAutoConfiguration
@ImportResource("classpath:spring-config.xml")
public class Application {

    public static void main(String[] args) {
        SpringApplication.run(Application.class, args);
    }
}

@Controller
public class GetController {
    @Autowired
    UserService userService;

    @RequestMapping(value = "/user", method = RequestMethod.GET)
    public @ResponseBody User getUser(@RequestParam(value="id", required=true) int id) {

        return userService.getUser(id);
    }
}


@Component
public class UserService {

    @Autowired
    private UserDAO UserDao;

    public User getUser(int id) {
        return getUserDao().load(id);
    }
}

Might I suggest using SpringData for the DAO you'll save much boilerplate code.

Looking at the autoconfig report that came out of the crash I can see that there is no DataSource defined. Spring Boot will create one for you if you have the right stuff on your classpath - eg at a minimum to get something working include h2 or hsqldb on your classpath.

Incidentally, the XML file is redundant if you use Spring Boot the right way.

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