I'm trying to compile R 3.1.1 from source with cairo support enabled. I want this because I'm trying to run R on a server which does not have a graphical environment (hence no X11), but still output PNG's.
I tried to configure R with
./configure --with-x=no --with-cairo=yes --with-libpng=yes --enable-R-shlib --prefix=$HOME
Doing this produces an R binary with no png or cairo support (as evidenced by capabilities()
). In config.log
, there is the following.
configure:31563: checking for X
configure:31749: result: disabled
configure:32420: result: using X11 ... no
configure:32530: checking whether pkg-config knows about cairo and pango
configure:32542: result: yes
configure:32576: checking whether cairo including pango is >= 1.2 and works
configure:32599: gcc -std=gnu99 -o conftest -g -O2 -fpic -I/usr/local/include -pthread -I/home/rmccloskey/include/pango-1.0 -I/home/rmccloskey/include/cairo -I/home/rmccl
oskey/include/glib-2.0 -I/home/rmccloskey/lib/glib-2.0/include -I/home/rmccloskey/include/pixman-1 -I/usr/include/freetype2 -I/home/rmccloskey/include/freetype2 -I/home/rmc
closkey/include/libpng16 -L/usr/local/lib64 conftest.c -lrt -ldl -lm -L/home/rmccloskey/lib -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo >
&5
conftest.c:232:24: fatal error: cairo-xlib.h: No such file or directory
#include <cairo-xlib.h>
^
compilation terminated.
As you can see, configure knows about cairo and pango, and it also knows that I'm not using X11. But it still tries to compile a file requiring cairo-xlib.h
? What can I do here?
I've been able to make this work with CentOS-6.5 and R-3.1.2. I had to yum install cairo and pango first. Here is my configure command:
./configure --with-recommended-packages=no --without-x --with-cairo --with-libpng --with-libtiff --with-jpeglib --enable-R-shlib
In the most narrow sense, Cairo appears to require x11 headers.
In a wider sense, look into the various answers detailing use of the xvfb
virtual x11 server -- they allow you headless use.
Also, you could try building without x11, png, cairo -- and then use one of the two cairo packages from CRAN to create graphs. In Debian/Ubuntu we also have at least the cairoDevice package pre-build for you.
I have the exact some problem. I solved this by using the very hackish way below.
In the Rxyz src directory, edit the configure file. There is the line:
#include <cairo-xlib.h>
I simply removed this line. And then run this file and make. Everything works for me. My cairo is compiled with out x11 support. Because I am on a shared RHEL6 box. I do everything without root. The purpose I do this is to make R work with Jupyter notebook. In addition to this, I also need to add options(bitmapType='cairo')
in $HOME/.Rprofile
. This Link is very helpful.
By doing all these hacks, everything works for me now. :)
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