I would like to write a function named "frequency" which can fix the frequency of pairs in the second half of my output, for example if I fix the frequency of the couple ['A', 'C'] at 0,5 and the frequency of the couple ['M', 'K'] at 0,5, I would like an output like following:
['A', 'K']
['A', 'K']
['A', 'K']
['A', 'K']
['A', 'K']
['A', 'C']
['A', 'C']
['A', 'C']
['M', 'K']
['M', 'K']
['M', 'K']
I would like to change easily the value of the frequency I set. I tried to build a Function for this purpose, but I just could count the frequency of the existing couples, without fixing them.
the code I have is the following:
for i in range(int(lengthPairs/2)):
pairs.append([aminoacids[0], aminoacids[11]])
print(int(lengthPairs/2))
for j in range(int(lengthPairs/2)+1):
dictionary = dict()
r1 = randrange(20)
r2 = randrange(20)
pairs.append([aminoacids[r1], aminoacids[r2]])
for pair in pairs:
print (pair)
where:
aminoacids = ['A', 'R', 'N', 'D', 'C', 'Q', 'E', 'G', 'H', 'I', 'L', 'K', 'M', 'F', 'P', 'S', 'T', 'W', 'Y', 'V']
lengthPairs = 10
pairs = list(list())
it gives me an output like this:
['A', 'K']
['A', 'K']
['A', 'K']
['A', 'K']
['A', 'K']
['A', 'C']
['M', 'K']
['I', 'I']
['F', 'G']
['V', 'H']
['V', 'I']
thank you very much for any assistance!
I tried my best to understand what you meant. And let's see if the following does what you want:
aminoacids = ['A', 'R', 'N', 'D', 'C', 'Q', 'E', 'G', 'H', 'I', 'L', 'K', 'M', 'F', 'P', 'S', 'T', 'W', 'Y', 'V']
pair_fq_change = [aminoacids[0], aminoacids[11]] #the pair that you'd like to change the frequency, e.g. ['A', 'K']
original_pairs = [['D', 'E'], ['S', 'F'], ['A', 'K'], ['A', 'K'], ['A', 'K'], ['A', 'K'], ['A', 'K'], ['B', 'C']]
def frequency(original_pairs, pair_fq_change, fq):
'''fq is the number of frequency that you want the pair_fq_change to have'''
updated_pairs = []
count = 0
for pair in original_pairs:
if pair != pair_fq_change:
updated_pairs.append(pair)
elif pair == pair_fq_change and count < fq:
updated_pairs.append(pair)
count += 1
else:
continue
return updated_pairs
updated_pairs = frequency(original_pairs, pair_fq_change, 3)
print(updated_pairs)
>>>[['D', 'E'], ['S', 'F'], ['A', 'K'], ['A', 'K'], ['A', 'K'], ['B', 'C']]
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