I have downloaded a jar file called beagle.14Jan16.841.jar from here and am trying to run it in cmd using the line
java –Xmx8g –jar beagle.14Jan16.841.jar gt=beaglefilt.vcf out=beagleoutput
My cmd directory is the location of the beagle.14Jan16.841.jar file.
The error I get is Error: Could not find or load main class ?Xmx8g
My java is up to date and PATH leads to my java bin folder ( java -version
works).
Your Problem is in - character,in your error say it as ?
Try to copy this command and run it:
java –jar beagle.14Jan16.841.jar gt=beaglefilt.vcf out=beagleoutput
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